Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq55 138 1e-27 >seq55 Length=1219 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| || || || || |||||||| |||||| | ||||| ||| | Sbjct 136 AAATATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCC 195 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | | ||| | || | || |||| |||||||| || || || |||| Sbjct 196 CTCTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGA 255 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| | ||||||| ||| || || || || || |||| | ||||||| ||||| Sbjct 256 TCAACAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTA 315 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||||| | || || |||||||| || Sbjct 316 CAACATCCAAAAGGAGTCAACTCTCCATTTGGTCCT 351 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| |||| ||||| || || || || || || ||||||||| |||| |||||| | | Sbjct 596 ATGTAAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGAGCCTTCT 655 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| || || || || ||||| |||| || Sbjct 656 GACACTATTGAAAACG-TCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCA 714 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| ||| || ||||| || || |||| | ||||| | ||||| || Sbjct 715 ACAAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAA 774 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || || ||||| || Sbjct 775 CATCCAAAAGGAGTCTACCCTCCACTTGGTTCT 807 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| | || ||||| || || ||||| || || |||||||| | ||||| ||| | | Sbjct 368 ATGTAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGAGCCATCA 427 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| || ||||| || |||| ||| Sbjct 428 GACACCATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAA 487 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || || | || || || || || || || | | ||||||| |||||||||| Sbjct 488 CAAAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAAC 547 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || |||||||| | || || ||||| || || Sbjct 548 ATTCAAAAGGAGTCAACTCTCCATTTAGTCCT 579 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || ||||| ||| |||| || ||| | | Sbjct 823 AATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATC 882 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| | || | || ||| ||||| || ||||| || |||| | Sbjct 883 AGATACTATTGAAAACG-TCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATC 941 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | || || | ||| || || || || || || | | || || ||||| | Sbjct 942 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATA 1001 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || || ||||| || Sbjct 1002 ACATCCAAAAGGAGTCAACCCTTCACTTGGTTCT 1035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500048757145600