Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11890 150 2e-31 seq7211 127 3e-24 seq15602 98.7 1e-15 >seq11890 Length=3034 Score = 150 bits (166), Expect = 2e-31 Identities = 644/1006 (64%), Gaps = 39/1006 (4%) Strand=Plus/Minus Query 111657 GATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTAT---GTTCATCCAC 111713 ||||||||| ||| | |||||||| || ||| ||| || ||||| || Sbjct 2122 GATATTGATGCTGCAATTGAGACATATAACTTAATGA---GTGATAGATGGTTCACTCAT 2066 Query 111714 GCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTT 111773 ||||| || || || |||||||||||||| |||| ||| ||||| || ||||||||| Sbjct 2065 GCAACCCCTACTCTTTTCAACGCTGGTACCCCAAAACCATAAATGAGTAGCTGTTTCCTT 2006 Query 111774 ATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGT-GCCCA 111832 | | ||||| || || || | || || || | ||||| | ||| || || Sbjct 2005 TTAATGATGAAGGATGACTCTATTCACGGAATATATGATACTCTTAA-GAACGTTGCTTT 1947 Query 111833 AATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTC 111892 || || ||| | |||||||| | || | | || || ||||||||| || || Sbjct 1946 GATTTCTAAGAGTGCTGGTGGAGTTGGACTTGCTGTTCACAATATCAGAGCCA-CAGGTA 1888 Query 111893 -TCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTA 111951 | || | || || ||||| || ||| |||| || |||| ||||| | || || | Sbjct 1887 GTTACATCAAGGGAACTAATGGACACTCAAATGGACTTGTTCCCATGCTCAGAGTTTTCA 1828 Query 111952 ACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCT 112008 | | || || | ||||| |||||| ||| | | ||||| || |||| ||| Sbjct 1827 ATGAAACTGCTAGATATGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTCATTCGCTATCT 1768 Query 112009 ATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTG 112068 | | ||||||||||| || ||| || | || |||||| | | | ||||| || Sbjct 1767 ACTTAGAGCCATGGCATGCTGATGTCTTTGACTTCCTTCAACTCAGAAAGAACCATGGAA 1708 Query 112069 ATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGA 112128 | || || | | ||| | |||| ||||||||| |||||||||| ||||||| Sbjct 1707 AAGAAGAATAAAGAGCTAGAGATTTATTCTTTGCTCTCTGGGTTCCAGATCTTTTCATGA 1648 Query 112129 AGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCT 112188 |||| || || | || ||||| |||| || |||||| | | || || |||| Sbjct 1647 AGAGGGTAAGAGACAACGGTGATTGGACTCTTTTCTGTCCAAATGAAGCCAAAGGCCTCT 1588 Query 112189 CCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGG 112248 || | || || |||||||||||| | || || || || || || || | Sbjct 1587 ATGAAGTTCACGGAGAAGAGTTTGAAGCCTTATATACTAAATATGAATCCCAAGGTATTG 1528 Query 112249 CGACTGCGACGGTGCCAGCTGCCGATG----TGTGGAAAGCTATTCTCAAGTCTCAAACC 112304 | ||| | || | | ||| | ||| || | ||| | | | ||| Sbjct 1527 GAAGAAAGACTAT--CAA--GGCAATGAAACTTTGGGAATCAATTATTGAAAGTTAAATT 1472 Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 ||||| ||||| || || |||||||| ||||| | ||| ||| || |||||| Sbjct 1471 GAGACAGGTACTCCCTACATGCTTTATAAAGATCACGCTAATGGAAAATCAAACCAAAAG 1412 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || || |||||||| || || ||| || ||| | |||| ||| | Sbjct 1411 AATCTTGGAACAATAAAGAGTTCTAATCTATGTTGTGAGATCATTGAATATACTTCTCCA 1352 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 ||||| | |||||||| || || || ||||| | ||||| | ||| || | Sbjct 1351 GATGAAATTGCTGTGTGCAATCTTGCCTCAATATCACTCCCTA--------GATACATA- 1301 Query 112485 ACAAAGACA---TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAAC 112541 ||||| | ||||||||||| ||||| || |||| || || || || || Sbjct 1300 ACAAATGGAGTCTTTGATTATGAGAAACTTCATAAAGTAACTTTCTAAGTTACCAAGAAT 1241 Query 112542 CTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAAT 112598 || |||||| | |||||| | |||| || || || |||| || || || ||| Sbjct 1240 CTTAACAGAATCATTGATGGCAATTACTATCCTTGCGATGAG---GCCAAAAACTCAAAT 1184 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 |||||||| | ||||| ||| ||||||| | || || || |||| Sbjct 1183 ATGAGACATAGACCAATCGGTATCGGTGTTTAGGGACTAGCTGATG 1138 >seq7211 Length=2975 Score = 127 bits (140), Expect = 3e-24 Identities = 731/1148 (64%), Gaps = 59/1148 (5%) Strand=Plus/Minus Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC--AAA 111585 ||||||||| ||| | ||||||||| ||| ||||| |||| | ||| || ||| Sbjct 2265 AGAGACTACAACTACGATTATTTTGGATTCAGAACCCTGGAGAGAGCCTATCTTTTAAAA 2206 Query 111586 GACTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTA 111645 || ||||| | || || | ||||| ||||| | ||| | ||| || || | Sbjct 2205 GA-TGGATCCAAAATA-ATTGAGAGACCACAACACATGCTGATGAGAGTCAGTATTGGAA 2148 Query 111646 TCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGT 111705 | || ||| ||| | || || | ||| || ||||| || ||| | | || Sbjct 2147 TTCACAAGGAGGATCTAGAATCAGCTTTTGAAACATATGATTTAATGAGTCAGCTTTGGT 2088 Query 111706 TCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTT 111765 ||| ||||| || ||||| ||||| || |||| || |||| || ||||| |||| Sbjct 2087 TCACTCACGCTACCCCAACACTCTTTAATTCTGGAACTCCAAAGCCTTAAATG---AGTT 2031 Query 111766 GTTTC--CTTATTG-CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822 || | |||||| | | || ||||||||||| | || || | | ||||| | Sbjct 2030 CTTGCTTCTTATTAACCATGAAAGAGGATTCAATTGACGGTATCTTTGAGACTCTAAGAT 1971 Query 111823 AATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATG-CACATCCATGATGTCAGA 111881 || || ||||||||| ||||| ||||| || | || || || |||| Sbjct 1970 AAATCGCAGTTATCTCAAAGGCTGCTGGAGGTATTGGTGTCTCAGTGTCA-GACATCAGG 1912 Query 111882 GCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 111941 || | ||| |||||||| ||||| || | ||| |||| | || || ||||| Sbjct 1911 GCAGCTGACTCTTACATTAGAGGAACAAACGGATACTCAAATGGATTGATACCTATGCTA 1852 Query 111942 CGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG----GGATC 111997 || ||||| | ||| || | ||||| | |||| || || | ||| || | Sbjct 1851 AAGGTTTTTAATGACACTGCAAGGTATGTTGATCAAGGAGG-CGGCAAAAGAAAAGGTGC 1793 Query 111998 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 112057 | | ||||||||| |||| |||||||| || ||||| || |||||| | | | Sbjct 1792 TTTTGCAGTCTATGTTGAACCATGGCATGCAGATATTTACGACTTCCTTCAACTCAGAAA 1733 Query 112058 CAACCAAGGTGATGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 || || ||| | || ||| | | || | ||||| |||| |||||||||||||||| Sbjct 1732 GAATCATGGTAAAGAAGAGAA-CAGAGCAAGAGATCTGTTCTATGCTCTCTGGATTCCAG 1674 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAG 112175 | | ||||||| || |||||| ||| || | ||| | | | ||||| || || Sbjct 1673 ACTTATTCATGAGAAGGGTTGAGAAGAATGAAGACTGGACATTGATGTGTCCCAACGAAT 1614 Query 112176 GCACCCGGTCTCTC-CGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTA-------CACAA 112227 || || || | | ||| | ||| ||||| ||||| || || || | Sbjct 1613 GC-CCAGGATTAACAACATGTTG-GGGAGAGGAATTTGATAAACTTTATGAGGAGTACGA 1556 Query 112228 A------GTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGA 112281 | | ||||||||||||| || | | || || || | | |||| Sbjct 1555 AATTTCCGGACGAGGAAGAAAGACGATCAA---------GGCTAGATGGC----TATGGA 1509 Query 112282 AAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCT 112341 ||| | | || || || ||||| ||||| |||||||| |||||||| | | Sbjct 1508 CCTAGATTGTTGAATCATAAGTTGAAACTGGGACACCCTATATGCTGTACAAAGATACTT 1449 Query 112342 GTAACCAAAAGAGTAATCAAAAGAAT-TTGGGTGTGATCAAGAGTTCCAACCTCTGTACA 112400 ||||| ||| ||||||| | ||| |||| ||| || || || || || ||||| Sbjct 1448 GTAACAGAAAATCTAATCAACAAAATCTTGGTTGT-ATAAAATCCTCGAATCTTTGTACT 1390 Query 112401 GAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCT 112460 |||||| | || ||||| | ||| || | ||||| |||||||| || || || || Sbjct 1389 GAAATCGTAGAGTTTACTAGCCCAGACGAAATTGCTGTCTGTAACCTTGCTTCTATAGCA 1330 Query 112461 CTCCCCAAGTATGTGGATCCAGAGAC-AAAGACATTTGATTATGAAAAACTCCACGAAGT 112519 ||| | | ||| | |||||| ||||| | ||| ||||| || | ||| | || Sbjct 1329 CTCAATAGATTTGTTATTAAAGAGACTAAAGA-GTATGACTATGAGAAGTTACACTATGT 1271 Query 112520 TACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC---CGT 112576 || || | |||| || || ||||||| ||||||||| ||| || || | Sbjct 1270 AACCAAGAGAATCACCAAGAATCTAAACAAGATTATTGATAACAATCACTATCCTATCCC 1211 Query 112577 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCT 112636 ||| ||| | || ||| | ||||| | ||||| ||| | ||||| ||||| | Sbjct 1210 TGA---AGCTAAATATTCAAATCTTAGACATAGACCAATCGGTATTGGTGTTCAAGGATT 1154 Query 112637 CGCGGATG 112644 ||| |||| Sbjct 1153 CGCAGATG 1146 >seq15602 Length=1555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTT-GCTGAGCG 102184 || ||||| |||||||| | || ||| ||| | || | || || || || ||| | Sbjct 850 AAAAAAGCTGATTGGGCACTCAAATGGATTGG---AGAGAC-CGCTCAATTCGCCGAGAG 905 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 ||| | || || || ||||||||| || ||||| ||||| ||||||||| | |||| Sbjct 906 ACTTGTAGCCTTCGCAGCTGTTGAGGGCATATTCTTTTCTGGCTCCTTCTGCTCAATTTT 965 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||||| |||||||| ||||| |||||||||||| ||||| || || | || || | Sbjct 966 CTGGCTAAAGAAGCGTGGTCTTATGCCAGGTCTCACATTCTCAAATGAATTGATTTCAAG 1025 Query 102305 TGACGAGGG 102313 ||||| || Sbjct 1026 AGACGAAGG 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620588455884800