Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11890 174 2e-38 seq7211 122 1e-22 seq15602 104 3e-17 >seq11890 Length=3034 Score = 174 bits (192), Expect = 2e-38 Identities = 621/958 (65%), Gaps = 37/958 (4%) Strand=Plus/Plus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || || || | |||||| | ||| || ||||| |||| |||||| || ||| | Sbjct 1138 CATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTATGTCTCATATTTGAGTTTTTGG 1197 Query 106338 CAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 106394 | |||| || ||||| |||| | ||||||| || ||| ||||| |||||||| Sbjct 1198 C---CTCATCGCAAGGATAGTAATTGCCATCAATGATTCTGTTAAGATTCTTGGTAACTT 1254 Query 106395 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 106454 || | || ||||||||| ||||||||||| || || || || | || Sbjct 1255 AGAAAGTTACTTTATGAAGTTTCTCATAATCAAA-----GACTCCATTTGTT-ATGTATC 1308 Query 106455 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 106514 | || || | ||||| || | |||||| ||||| | ||||| | || || || | Sbjct 1309 TAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCTGGAGAAGTATATTCAA 1368 Query 106515 AAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTT 106574 || || ||| | || |||||||| || || || | |||||||||||| ||| Sbjct 1369 TGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCTTTTGGTTTGATTTTC 1428 Query 106575 TGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTT--GA 106631 || || | ||| || || ||||||||||| || || ||||| | | |||| | Sbjct 1429 CATTAGCGTG-ATCTTTATAAAGCATGTAGGGAGTACCTGTCTC--AATTTAACTTTCAA 1485 Query 106632 GAATTGCCTTCCACA----CATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGC 106686 ||||| | ||| | ||| | | || || | | | || | || | | Sbjct 1486 TAATTGATTCCCAAAGTTTCATTGCC--TTGATAGTCTTTCTT---CCAATACCTTGGGA 1540 Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 106746 || || || || || | |||||||||||| || || | || |||| ||| || Sbjct 1541 TTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTGGC 1600 Query 106747 CTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 | | |||||||||||||| ||| | ||| || |||| |||||||||||| || Sbjct 1601 TTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATC 1660 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 106866 ||||| ||| || | | || | ||||||| | ||||| | || ||||| Sbjct 1661 TGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTT 1720 Query 106867 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 106926 || | | |||||| || | || ||| || ||||||||||| | |||| |||| || Sbjct 1721 TCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGA 1780 Query 106927 TCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||||||| | ||| |||| | ||||| | || || | || || || | || Sbjct 1781 ACCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAG 1840 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT---ACGAGATTTATTGGC 107040 ||| |||| || |||| ||| || ||||| || ||| || || | | |||| Sbjct 1841 CATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCT---GTGGC 1897 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 ||| | || || | | |||| || ||||| | ||| || || ||| | Sbjct 1898 TCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCAAAGCAACGTT 1957 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | ||||||| |||| || |||| || ||||| ||||| | | |||||| || || Sbjct 1958 CTTAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAAAAGGAAACAGCT 2017 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 ||| | ||| |||| |||||||| ||||| || || || ||||| ||| ||||| Sbjct 2018 ACTCATTTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAAC 2075 >seq7211 Length=2975 Score = 122 bits (134), Expect = 1e-22 Identities = 398/607 (66%), Gaps = 15/607 (2%) Strand=Plus/Plus Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 106839 || |||||||| ||||||| | |||||||||||| || | | || |||||||| Sbjct 1648 CTTCTCAACCCTTCTCATGAATAAGTCTGGAATCCAGAGAGCATAGAACAGATCTCTTGC 1707 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 | |||||| | ||| || || || | | |||||| || ||||| || || Sbjct 1708 TCTGTTCTCTTCTTTACCATGATTCTTTCTGAGTTGAAGGAAGTCGTAAATATCTGCATG 1767 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACAT 106955 |||||| |||| ||||||||| | || || |||| | || || |||||| |||| Sbjct 1768 CCATGGTTCAACATAGACTGCAAAAGCACCTTTTCTTTTGCCG-CCTCCTTGATCAACAT 1826 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | | || ||| | ||||| || ||||| || || | |||| ||| | || |||| Sbjct 1827 ACCTTGCAGTGTCATTAAAAACCTTTAGCATAGGTATCAATCCATTTGAGTATCCGTTTG 1886 Query 107016 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTG-CATCCCAATACCCCCA 107074 | || | ||| ||| | | || || | || || || | |||||||| ||| Sbjct 1887 TTCCTCTAATGTAAGAGTCAGCTGCCCTGATGTC-TGACACTGAGACACCAATACCTCCA 1945 Query 107075 GCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 107132 || ||||||||| |||| || | ||||| || ||||||||| ||||| | Sbjct 1946 GCAGCCTTTGAGATAACTGCGATTTATC--TTAGAGTCTCAAAGATACCGTCAATTGAAT 2003 Query 107133 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 107192 |||| || ||| | | ||||||| ||| | || |||| || |||| ||| | Sbjct 2004 CCTCTTTCATGGTTAATAAGAAGCAAGAACTCATTTAAGGCTTTGGAGTTCCAGAATTAA 2063 Query 107193 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA 107252 |||| ||||| || |||||| ||||| | || ||| || ||||| || || Sbjct 2064 AGAGTGTTGGGGTAGCGTGAGTGAACCAAAGCTGACTCATTAAATCATATGTTTCAAAAG 2123 Query 107253 CAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTG 107312 | || || | || ||| ||| || || || || | ||| | ||||| ||| ||| Sbjct 2124 CTGATTCTAGATCCTCCTTGTGAATTCCAATACTGACTCTCATCAGCATGTGTTGTGGTC 2183 Query 107313 TTTCCATGAGGATGCCATCGAGCCGTT-GAAGATA-GCTCTTCTCAAGGGTTTTGAGACC 107370 | || || | || ||| | | || |||||| |||| |||| |||||| ||| || Sbjct 2184 TCTCAATTATTTTG-GATCCATCTTTTAAAAGATAGGCTC-TCTCCAGGGTTCTGAATCC 2241 Query 107371 AAAGTAA 107377 ||| ||| Sbjct 2242 AAAATAA 2248 >seq15602 Length=1555 Score = 104 bits (114), Expect = 3e-17 Identities = 162/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | ||| || |||| ||||| | |||||||||||| || |||||||| ||||| Sbjct 1041 GTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACC 982 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| |||| | |||||| || || || ||||| || ||||| ||| Sbjct 981 ACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGC 922 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCATTTCATTG 117463 || || || | ||| | ||||||||| ||||| | || | ||| |||||| | || Sbjct 921 TGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCG-GTCTCT---CCAATCCATTTGAGTG 866 Query 117464 CCCATTTCGCCTTCTTCTC-AATACATGGTACAGTTTGGATGGCTT 117508 |||| | || || || | | ||| ||||| | | |||| |||| Sbjct 865 CCCAATCAGCTTTTTTAGCTACTAC-TGGTATATTGTGGACAGCTT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589834484761600