Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq16138 114 2e-20 >seq16138 Length=3461 Score = 114 bits (126), Expect = 2e-20 Identities = 327/497 (66%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 159289 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 159348 ||| | || ||| | ||||| ||| | ||| | | || || ||||||||| | | || Sbjct 1328 GATGCAATCTCACTTCAACCAAACTCTGGAGCCAACGGAGAATATGCAGGATTAATGGCT 1269 Query 159349 ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAG 159408 || | ||| ||| || | ||| ||| ||||| || | || | || || | Sbjct 1268 ATTAAGAAATATCATGAAAGCAGAGGGGATCTCCAAAGAGATATTTGCCTTATTCCTGTT 1209 Query 159409 TCAGCACATGGAACTAATCCTGCATCAGCAG-TGATGGCAGGGATGAAAGTTGTAGGTGT 159467 ||||| ||||| || || || || ||||| | | | | | |||||| | || | ||| Sbjct 1208 TCAGCTCATGGCACCAACCCAGCCTCAGCTGCTCTTTGTAAC-ATGAAAATCGTTGTTGT 1150 Query 159468 CAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCA----ATCA 159523 |||||||||| |||| ||||| || || ||||||| | | ||||| | || Sbjct 1149 AAAGTGTGATGCCAATGGTAACATTGATGTCCAAGATCTTAAACAAAAAGCTGAAGAGCA 1090 Query 159524 TGAATACATTTGAACTGTCATGTATT-ATGATTACATATCCATCTACACATGGTGTATTT 159582 | | ||| || || | || ||| ||||||||||||||||| || |||||||| || Sbjct 1089 TAAGGACA----AATTGGC-TGCATTCATGATTACATATCCATCCACTCATGGTGTTTTC 1035 Query 159583 GAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTT 159642 ||| | | ||| | || || | ||| | ||| | || || || || || ||| | Sbjct 1034 GAAGCTGCCGTCATTGAAATGTGCGATATTATCCATAAAAACGGAGGGCAAGTCTATATG 975 Query 159643 GATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGAT 159702 |||||||| || | ||||| | | || | | ||| | ||| || ||| Sbjct 974 GATGGTGCTAACTTCAATGCCTAAATGGGATTGACTTCCCCAGGATTTGTTGGAGCCGAT 915 Query 159703 GTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGC 159762 || | || | ||||| || ||||| |||| ||||| ||||| ||||| ||||| || Sbjct 914 GTTGGCCACTTGAACTTGCACAAGACTTTCTCAATTCCCCATGGTGGTGGTGGTCCAGGT 855 Query 159763 GTAGGTCCTATTGGTGT 159779 || || || ||||| || Sbjct 854 GTTGGCCCAATTGGAGT 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587905363302400