Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5287 179 8e-40 seq55 159 8e-34 seq18108 125 2e-23 seq18912 113 1e-19 seq11890 87.8 4e-12 >seq5287 Length=1089 Score = 179 bits (198), Expect = 8e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | ||| | |||||| ||||| || |||| || || || || | |||||| Sbjct 862 TCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAAAGAGT 803 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || || || |||||||||||||||||||||| ||||||||| || ||||| || Sbjct 802 TCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGAATACC 743 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| | ||| || ||||||||||||||| ||||| || ||| || || || Sbjct 742 TTCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACGTCGAG 683 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || || | || || ||||| | |||||| Sbjct 682 GGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | ||| ||||| || || ||||||||||||||||| | || || Sbjct 634 TCTGAGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAGAGGGT 575 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | |||||||| ||||| || |||| | ||| || || || || || Sbjct 574 TCTACCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGGATTCC 515 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || |||||||||||||| || ||||| |||||||| || || || || ||||| Sbjct 514 CTCCTTGTCTTGAATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAACATCAAG 455 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || | ||||| || || | || || ||||| Sbjct 454 AGTGATGGTCTTGCCGGTAAGGGTCTTAACGAA 422 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | || ||||| || ||||| || || ||||| || | || || Sbjct 406 TCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGGGT 347 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | || ||| || ||||||||||||| ||||| || || || || || Sbjct 346 TCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACC 287 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || |||||| || ||||| ||||| || || || || | Sbjct 286 TTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACATCTAA 227 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| |||||||| || || || |||||||| | || ||| Sbjct 226 GGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACAT 185 >seq55 Length=1219 Score = 159 bits (176), Expect = 8e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | ||| | |||||| || ||||| ||||| || || || || | |||||| Sbjct 1045 TCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGT 986 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || || |||||||| ||||||||||||| |||||| || || || || || Sbjct 985 TCTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCC 926 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| | || || ||||||||| ||||| || || || || || || || Sbjct 925 TTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAG 866 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| ||||| || || | || || ||||| | ||||||| Sbjct 865 GGTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | || ||||| ||||| |||||||| ||||| ||| || || Sbjct 589 TCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGT 530 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| || || |||||||||| |||||| || || || || || Sbjct 529 TCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCC 470 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||| || |||||| ||||| |||||||| || || || ||||| Sbjct 469 TTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAG 410 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || | |||||||| || | || || ||||| Sbjct 409 AGTGATGGTCTTTCCAGTGAGGGTCTTGACGAA 377 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | || ||||| ||||| ||||| || ||||| || || || Sbjct 361 TCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGT 302 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || ||||| ||||| || ||||| || |||| |||||| || || || || || Sbjct 301 TCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACC 242 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || |||||| || ||||||||||| || || || || | Sbjct 241 TTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAA 182 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 ||| | || || || || | || || ||||| | |||||| | ||||| Sbjct 181 GGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCATATTTGGTT 132 >seq18108 Length=1037 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || ||||| ||||| ||||||| ||| || ||||| || | ||| || || | || ||| Sbjct 399 CTAAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCAGAGAGGGTT 340 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || |||||||| | ||| || || || |||||||||| |||| ||| | || |||||| Sbjct 339 CTGCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGTCGGCTGGTATGCCT 280 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || |||||||| || || ||||||| ||||| || || ||| ||||||| Sbjct 279 TCCTTGTCTTGGATCTTGGCCTTGACGGACTCAAAAGTCTCGTTGGCTTCACATTCAAGG 220 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||| |||||||| || | ||| |||| || Sbjct 219 GTAATTGTCTTTCCAGTGAGTGTTCTTACAAA 188 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | |||| ||| || ||||||| || || || || | | || Sbjct 856 TCTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCAGATAACGT 797 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || || ||||| || || || || || |||| ||| || | ||||| || Sbjct 796 TCTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGATGGAATACC 737 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||||||||| | ||||| | | |||||| | || || ||||| |||| Sbjct 736 TTCTTTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCCACGGCAAG 677 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || || ||| | || || | |||||| Sbjct 676 AGTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 >seq18912 Length=238 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || |||||||| |||| ||||| ||||||||||| ||||| ||||| || || Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATC 179 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||||||||||||||||| ||| ||| || || || ||||| | ||||| || Sbjct 178 TTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTGCCG 119 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || || ||||| | |||||| Sbjct 118 GTCAGGGTCTTGACGAAGATCTGCATT 92 >seq11890 Length=3034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 160574 AGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAA 160633 ||||| ||||| | |||| || ||||| | | ||||||||||||||||| || | | Sbjct 1696 AGAGCTAGAGATTTATTCTTTGCTCTCTGGGTTCCAGATCTTTTCATGAAGAGGGTAAGA 1637 Query 160634 GACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGC 160671 ||||| || ||||||| ||||||||||| |||||||| Sbjct 1636 GACAACGGTGATTGGACTCTTTTCTGTCCAAATGAAGC 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109199569777280