Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq55 104 2e-17 seq6367 95.1 8e-15 seq5287 91.5 1e-13 >seq55 Length=1219 Score = 104 bits (114), Expect = 2e-17 Identities = 167/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 34748 ATCATTT-CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTAT 34806 |||||| || || || | || | ||||||||||| || || || || ||||||| Sbjct 1058 ATCATTGACCACCTCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTAT 999 Query 34807 AGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGT 34866 |||| ||||| ||| | |||| || || || || || || || || |||| ||| || | Sbjct 998 AGTCTGAAAGAGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGAT 939 Query 34867 CTTGCGGCACCCCCTCCTTGTCGCTA-ATCTTCTGTTTGACGGATGCTATCGATTCACCG 34925 | | || | || |||||||| ||| ||||| |||||| | | || | || Sbjct 938 CGGGTGGGATTCCTTCCTTGTC-CTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGAT 880 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||||||||| ||| ||||| || || ||||| ||||| || ||||| ||||| Sbjct 879 GGCTCAACATCGAGGGTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 824 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || || | || | ||||||||| | || || || || ||||||||||| Sbjct 824 TTCCACCTCTAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCAC 765 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | || || || |||||||| || || || |||| ||| || || | | Sbjct 764 TAAGGGTTCTGCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAG 705 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || ||||| |||||| | | || | ||| | ||| | Sbjct 704 GAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGA 645 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| ||| ||||| || || || || ||||| || ||||| | |||| Sbjct 644 CATCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAGATTTACATA 595 >seq6367 Length=732 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||||| |||||||||| || |||||| || ||||| || || || Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| | |||| |||| || ||||||||||| || |||| ||| || || | || Sbjct 461 AAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGG 520 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| || ||| | || | ||| || ||| ||| Sbjct 521 ATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACA 580 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || || || || ||||| | |||||| || ||||||| ||| || Sbjct 581 TCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTT 630 >seq5287 Length=1089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | || | ||||||||||| ||| ||| || | ||||||||||| ||| Sbjct 867 CCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAA 808 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | | || || || || || || || || || |||| ||| ||||| | || Sbjct 807 AGAGTTCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGA 748 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| |||||| |||||| | || | || | ||||| Sbjct 747 ATACCTTCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACG 688 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| ||| || || || || ||||| ||||| || ||||| |||||| Sbjct 687 TCGAGGGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATA 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324555103595520