Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7211 300 2e-76 seq11890 280 2e-70 seq15602 217 2e-51 >seq7211 Length=2975 Score = 300 bits (332), Expect = 2e-76 Identities = 747/1121 (67%), Gaps = 34/1121 (3%) Strand=Plus/Plus Query 47702 ATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC 47761 |||||| |||||||||||||||||||| ||||||||||| | ||| ||| | | ||| Sbjct 1147 ATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTAGC 1206 Query 47762 TTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNN 47821 ||| || | ||||| | || |||| ||||| || |||||| Sbjct 1207 TTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGATTCTCTT 1266 Query 47822 NACAATTTCTCTTAATTTATTAAAATCAAACTTGTTA------TTTATAACAAACCTATT 47875 | | ||| || | | | ||| ||| ||| || |||||||| ||||| Sbjct 1267 GGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATCTATT 1326 Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||||||||||| || || ||||| ||||| | || | ||| ||||| | | || || Sbjct 1327 GAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACGAT 1386 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 ||||| ||| ||||| |||| ||| ||| | |||||| |||||| |||| Sbjct 1387 TTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTGTT 1446 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| | || ||||| |||||| | ||||| |||||||| | | ||||||| || | Sbjct 1447 ACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATCTA 1506 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG----TTCGTATT 48111 |||| | |||||||| || ||| ||| | || | |||||| | Sbjct 1507 GGTCCATAGCCATCTAGCCTTGATCG----TCTTTCTTCCTCGTCCGGAAATTTCGTACT 1562 Query 48112 TAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACATTCATTA 48170 ||| | || |||||||| || ||| ||| || | ||| || || ||||| || Sbjct 1563 CCTCATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGT-TAATCCTGGGCATTCGTTG 1621 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 ||||||||||||| ||| || |||| || | || || |||| |||| ||||| ||| Sbjct 1622 GGACACATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGAATC 1681 Query 48231 CAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 || ||||| ||| || | ||| || | ||| ||||| || ||| |||| || | || Sbjct 1682 CAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCTGAG 1740 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || ||| ||||| ||||| |||||||||||||| | ||| | ||| | ||||| Sbjct 1741 TTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACCTTT 1800 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || ||| ||||||||||| | ||| || ||||| | ||| |||| ||| ||| || Sbjct 1801 TCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCATAGG 1860 Query 48410 GA-CAATACCATTTGA-TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA 48467 | |||| |||||||| ||| || || ||||| ||| ||| || || || || Sbjct 1861 TATCAAT-CCATTTGAGTAT-CCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGATG 1918 Query 48468 TTACTAATTGAAATACCTATACCACCTGC--CATTTTAGATATTAGAGCACACCGTTTAA 48525 | | ||| | ||| ||||| || || | ||| ||||| | || | | | Sbjct 1919 TCTGACACTGAGACACCAATACCTCCAGCAGCCTTTGAGATA--ACTGCGATTTATCTTA 1976 Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585 | || ||| | || || || || ||| ||| |||| |||||| || ||| | || Sbjct 1977 GAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACTCA 2036 Query 48586 TTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT 48645 ||| || | |||||| |||||||| | |||||| | || ||| | ||||| || Sbjct 2037 TTTAAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAACCAAAGCT 2096 Query 48646 --CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTA 48702 || || || | ||||||||||| | | || |||| |||| | ||| || || || | Sbjct 2097 GACTCAT--TAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGAATTCCAA 2153 Query 48703 TAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT-TTTCAAA 48761 || || | ||| | ||| | ||| ||||| |||| |||||| || || ||| ||| Sbjct 2154 TACTGACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTTG-GATCCATCTTTTAAA 2212 Query 48762 AGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||||| | | | |||| ||| | || |||||||| | ||| Sbjct 2213 AGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTA 2253 >seq11890 Length=3034 Score = 280 bits (310), Expect = 2e-70 Identities = 628/936 (67%), Gaps = 20/936 (2%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 |||| ||| || || ||||| || ||||| | |||| |||| |||||||| || || Sbjct 1314 AGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCTGGAGAAGTATATTCAATGATC 1373 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| |||||||||| || || || || || | ||| | || || || || Sbjct 1374 TCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCTTTTGGTT----TGATT-TTC 1428 Query 47997 CAT--GCGT---CCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 ||| |||| | || |||||||| | || || || || || || | | |||||| | Sbjct 1429 CATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTCTCAATTTAACTTTCAATAA 1488 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTT-ATTATCATG---TTCG 48107 | |||| ||||| || | ||||| ||| ||| ||| | || | || ||| Sbjct 1489 TTGATTCCCAAAGTTTCATTGCCTTGATAG----TCTTTCTTCCAATACCTTGGGATTCA 1544 Query 48108 TATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCA 48167 |||||||||||||| ||||| || || || | || | || | || |||| Sbjct 1545 TATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTGGCTTCA 1604 Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227 || ||||| | | | |||||| | | | | |||| || |||| || | |||||| Sbjct 1605 TTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATCTGGA 1664 Query 48228 ATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA 48287 | ||| ||||| | |||||||| |||| |||| |||||| || ||| ||| || | Sbjct 1665 ACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTTCTG 1724 Query 48288 AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCT 48347 |||| ||| ||||| | | ||||||||||||||| ||||| || || || | | ||| Sbjct 1725 AGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAACCC 1784 Query 48348 GGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATT 48407 || || ||| ||||| || | |||||| ||||| | || ||||||| | ||| Sbjct 1785 TTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGCATG 1844 Query 48408 GGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA 48467 || |||| |||||||| ||||| |||||| || ||||| || | ||||| ||| Sbjct 1845 GGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCTGTGGCTCTGATA 1904 Query 48468 TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT-TTAAG 48526 || || | || || | ||||| || | ||||| || | |||| || | ||||| Sbjct 1905 TTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCAAAGCA-ACGTTCTTAAG 1963 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 |||||||| ||||| | ||| ||||| |||| |||| || ||||| ||| ||| Sbjct 1964 AGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAAAAGGAAACAGCTACTCAT 2023 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 || || | || || | || || | || || | ||||||| | |||||| | || Sbjct 2024 TTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAACCATCTATC 2083 Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706 | || |||||||| ||||| ||| ||| ||||| || || ||||||| || Sbjct 2084 ACTCATTAAGTTATATGTCTCAATTGCAGCATCAATATCAGTTTTGTGGATACCTACTGA 2143 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 || | | | ||||| || ||||||||||| || || ||| | |||||||||||| Sbjct 2144 AACTCTGAGAAGCATATGCTGGGGTCTTTCAACGATCTTTCCATTGACTTTCAAAAGATA 2203 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || | ||| | || ||| | || || || | ||| Sbjct 2204 TGCTCGTTCAAGAGTCTTATATCCGAAGTAATCGTA 2239 >seq15602 Length=1555 Score = 217 bits (240), Expect = 2e-51 Identities = 586/883 (66%), Gaps = 15/883 (2%) Strand=Plus/Minus Query 18685 ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAA 18743 ||||| ||||||||||| |||||||| || ||| || || ||| ||||| | ||||| Sbjct 1331 ACTCTCTTTTCAAAGAAGTTAGTTTTGCCTGTTAAAGAAAT-CATGTCCATCCATTCAAA 1273 Query 18744 TGGATTTTTTACATTATA-TAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTA 18802 |||||| | || | ||| || ||| | | ||||| | ||||| ||||| || || | Sbjct 1272 TGGATTCTCGACTTGATAGTACTTTGGT-ACTCCTAGGGCAAATAGAAGTCTGTCTGCAA 1214 Query 18803 CAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTG 18862 | || | || || |||| | | | ||||| || || || | || ||||||| Sbjct 1213 CGAACATGATGTACTGACTCATGAGTTTTGAGTTCATACCGATCAACTCGACTGGTAGTG 1154 Query 18863 CATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTAT 18922 || | | || || ||| ||| ||||||| | || ||||| | | ||| | Sbjct 1153 ACTCACTTACGAACTCCAATTCAATAGTTACTGCGTTGGAGATAATCTCAAGGATTCTCT 1094 Query 18923 CTTCATTAGGAGGGTATAGAAGATGT--TTAAACATCAAACATGCAAAATCACAATGTAG 18980 | | | || ||| | ||||| || | | | ||| || ||||| || | Sbjct 1093 CGT--TGGAGATTTTATTGTTGATGTGCTTGTAGAGGAGACACGCGAAATCGGTGTGCAT 1036 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttt 19040 || |||||||| ||||||||||| || ||||| | ||| ||||| || || | || Sbjct 1035 ACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACCACGCTT 976 Query 19041 ttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAA 19099 |||| |||||| || || ||| || || |||||||||||||| || || || ||||| | Sbjct 975 CTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGCTGCGA 917 Query 19100 AAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAAT 19159 | || || ||||| || | | ||| | | ||||||||| |||||||||| Sbjct 916 AGGCTACAAGTCTCTCGGCGAATTGAGCGG---TCTCTCCAATCCATTTGAGTGCCCAAT 860 Query 19160 CAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCAT 19219 |||| || || ||| ||| || | | | || || || ||| | || | Sbjct 859 CAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGAAGAGAAATTCTTTTTCTT 800 Query 19220 CTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTA 19279 || || ||| | | || || | | | || |||| || || || || | Sbjct 799 GTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTTCACTGTGGATGTTCTCCA 740 Query 19280 TAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATC 19339 | |||||| ||||| || |||||||| || || | | | | |||| | || |||| Sbjct 739 TCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTTAGATTTCAGTGCAGAATC 680 Query 19340 TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTT 19399 | | ||||||||||||||||||| || ||| ||| ||||| || |||| ||||| | Sbjct 679 TCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAAAGAAGGCTAGAACATGCT 620 Query 19400 TAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAATATCTTTAGATAAA 19458 ||||||| ||| | || | || || | | | | |||||| |||||||| ||| || | Sbjct 619 TAATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCCTTAATATCAGTAGCTAGA 561 Query 19459 TCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCA 19518 || | |||||| ||||| || | |||| | | ||| ||||| ||||| |||||| Sbjct 560 TCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTGTACATTTTCCAGATATCA 501 Query 19519 CGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTT 19561 |||| ||||| | ||||||||||| ||| |||||||| Sbjct 500 TTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTTTCTT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561969397017600