Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq15602 185 1e-41 >seq15602 Length=1555 Score = 185 bits (204), Expect = 1e-41 Identities = 402/592 (68%), Gaps = 11/592 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| || ||||| || | |||||| ||||| ||||||||||| || || || | Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGA 37293 |||||||| | ||| | || || | ||| || |||| ||| ||| | |||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCCAGAAAAGA 938 Query 37294 AAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAG 37353 | || || ||||| ||||| || |||||||| | |||| |||| | | || Sbjct 937 ATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAA--TTGAGCGGTC-TCTC 881 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTA-ATTTAACACATTCAATTGTTTCAATTGCT 37412 ||||||||| || |||||| || ||| | || || | || | | | ||| Sbjct 880 CAATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTAC-TGGTATATTGTGGACAGCT 822 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||||||| | |||||||| || | || |||| ||||| || | | ||| Sbjct 821 TTGAAGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAA 762 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 ||||| ||| || || || || ||||| || ||||| ||||| ||||| |||| Sbjct 761 GTTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGC 702 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | || | || | | || |||| ||| || |||||||||||||| || ||| ||| Sbjct 701 ACTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCA 642 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAATTTTTTCC 37650 |||||||| || ||||||| || ||||| ||||| || | | ||| | | | | || Sbjct 641 GCAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTG--AGTCTCTCCC 584 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 |||| |||||||| | | || ||||| ||| || ||||| || |||| | | Sbjct 583 AATCCTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGAT 524 Query 37711 GTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCT 37762 ||| ||||| |||| |||||||| | || || || | || |||||||| Sbjct 523 CTTTGTACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592169905433600