Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5287 140 3e-28 seq6367 116 3e-21 seq18108 113 4e-20 seq55 111 1e-19 >seq5287 Length=1089 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || || || || || |||||||| ||||| ||||||||||| | | Sbjct 639 CCTCCTCTGAGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAG 580 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| |||||||||||||| || || || | | || ||||||||| || Sbjct 579 AGGGTTCTACCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGG 520 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||||||||| ||| || |||| | || || || | || || Sbjct 519 ATTCCCTCCTTGTCTTGAATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAACA 460 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || |||||||| | || || || || |||| ||| Sbjct 459 TCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTACAT 413 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || || ||||| || ||||||||||| || || ||||| || | Sbjct 411 CCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAT 352 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || || | ||| || || || || | | |||||||||||| || Sbjct 351 AGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGG 292 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || || ||| |||| | ||||||||| | || || Sbjct 291 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACA 232 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || | || | || || || ||||| || ||||| || || | |||| || Sbjct 231 TCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACATGATT 181 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || ||| || |||||||| ||||| |||| || || || || | Sbjct 867 CCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAA 808 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | |||||||||||| || || | | ||||| ||||| ||| Sbjct 807 AGAGTTCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGA 748 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| || | ||| || || || | || | |||||| || | ||| || Sbjct 747 ATACCTTCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACG 688 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || ||||| | || || || || || ||||| Sbjct 687 TCGAGGGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 >seq6367 Length=732 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || || || ||||| || ||||||||||| || |||||||| | Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| ||||| | ||| || ||||| || | | |||||||| || || Sbjct 461 AAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGG 520 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| ||||| || || || | || | || ||||| | || || Sbjct 521 ATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACA 580 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || || ||||| || || || |||| ||| Sbjct 581 TCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACAT 627 >seq18108 Length=1037 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||||||||| | | | |||||||||| || |||||||||| || || || || Sbjct 864 TTTCCTCCTCTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCA 805 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | ||||| | || || | || || || |||||||| | | |||| ||||| Sbjct 804 GATAACGTTCTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGAT 745 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| |||||||| ||||||||||| | || | |||| | | || || | ||| Sbjct 744 GGAATACCTTCTTTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCC 685 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||||| || || |||||||| ||| | ||||| || ||||| Sbjct 684 ACGGCAAGAGTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 >seq55 Length=1219 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || || || || ||||| || ||||| ||| || |||||| |||| || Sbjct 576 ACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCCATCTTCA 517 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| || | | ||||||||||| || || ||||| || |||||| Sbjct 516 AGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 457 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || |||||||||| || || Sbjct 456 ATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTGATGGTCTTT 397 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || |||| ||| Sbjct 396 CCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | || ||||| || || || || ||||| || ||||| || | Sbjct 366 CCTCCTCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTG 307 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | |||||| || || || || | | ||||||||||| || Sbjct 306 AGGGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGG 247 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || || || ||| |||| | |||||||| | || || Sbjct 246 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACG 187 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| |||||||| || | || || || || || ||||| Sbjct 186 TCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 140 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | | ||| || || |||||||| || ||||| || || || || Sbjct 824 TTCCACCTCTAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCAC 765 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || || | ||| || || || || || | | ||||||||||| | Sbjct 764 TAAGGGTTCTGCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAG 705 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||| || || || || |||| | ||||||||| | || | Sbjct 704 GAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGA 645 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || |||| || || ||||| | || || || || || | ||| Sbjct 644 CATCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAGATTTACAT 596 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || |||||||| || || ||||| || || || || | | |||||| |||| || Sbjct 1033 AACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTTCCATCCTC 974 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||||||| || || || | | ||||||||||| || || ||||| || || | Sbjct 973 AAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCCTA 914 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || || |||| | ||| || || | || || || || || | || || Sbjct 913 GATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGGTAATGGTCTT 854 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || || ||||| Sbjct 853 ACCGGTGAGGGTCTTGACGAAGATTTGCAT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396182579882880