Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq15602 98.7 2e-15 >seq15602 Length=1555 Score = 98.7 bits (108), Expect = 2e-15 Identities = 315/484 (65%), Gaps = 16/484 (3%) Strand=Plus/Minus Query 48112 GTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAG 48171 ||||||| ||||| | || || || || |||||| |||||||| | || | Sbjct 1071 GTGCTTG---TAGAGGAGACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAA 1015 Query 48172 CACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGC 48231 | || ||||| |||||| ||||| | || | || || ||||||||||||| Sbjct 1014 TTCATTTGAGAATGTGAGACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGAGCA 955 Query 48232 GAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAA 48291 ||| |||||||| ||||| |||||||| || || ||||| || || ||||| |||| Sbjct 954 GAAGGAGCCAGAAAAGAATATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAA 895 Query 48292 AGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||| ||| || ||||| || ||||| || || || || | ||| Sbjct 894 TTGAGCGGTCT---CTCCAATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGG 838 Query 48352 CATCGTCTCTATGGCCCGGAAGAGC--TTCTTGCACTCACCTGCGTCCGCAACATAGGT- 48408 || | | | || |||||| ||||| || || ||| || | || Sbjct 837 TATATTGTGGACAGCTTTGAAGAGAAATTCTTTTTCTTG--TGGGTCACTAATTAAAGTG 780 Query 48409 --AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCG 48466 | | || || | || | ||| ||| | ||||| || |||||||| || Sbjct 779 TCAATAAGAAGA---GAATAAGTTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCA 723 Query 48467 TAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCA 48526 ||||| || |||||| ||| | | ||| ||| ||||||||| || ||| ||| Sbjct 722 TAGAAACATCTAGCCTCAGGCACTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCA 663 Query 48527 TTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCG 48586 || ||||| || || ||||||||||||||||| || ||||| |||| || || | |||| Sbjct 662 TTAACTATACCGTCAGAAGCAGCAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCG 603 Query 48587 TTGT 48590 |||| Sbjct 602 TTGT 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931301779865600