Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5287 100 2e-16 seq6367 93.3 4e-14 seq55 87.8 2e-12 >seq5287 Length=1089 Score = 100 bits (110), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 |||| |||| || ||||| |||||| | || |||||| ||||||| || || || Sbjct 492 AAGCTAAAATTCAA-GACAAGGAGGGAATCCCACCCGATCAATAGAGACTCATTTTCGCC 550 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || || |||||||||||| || ||| | | ||||| || |||||||| ||||||||| Sbjct 551 GGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAATATTCAAAAGGAATCTACT 610 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||| |||| ||||| | ||||||| || Sbjct 611 CTCCACTTGGTCCTAAGACTCAGAGGAGGTAT 642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||| || ||||| |||||||| || || || |||||| || || || || Sbjct 185 ATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCATCT 244 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| || || || || | || |||||| Sbjct 245 GACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAA 304 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || || || | || ||||| | ||| | | || || ||| Sbjct 305 CAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAAC 364 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||||||||| || |||| ||||| | ||||||| || Sbjct 365 ATCCAGAAAGAATCTACTCTCCATTTGGTCCTAAGACTCAGAGGAGGTAT 414 >seq6367 Length=732 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 || ||||| || | ||| |||||||| ||||| |||||||| || || | |||||| Sbjct 534 GATAAAGAAGGTATCCCCCCTGATCAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAA 475 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 474 GATGGAAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTG 415 Query 28767 AGATTACGAGGAGG 28780 ||| | ||||||| Sbjct 414 AGACTTAGAGGAGG 401 >seq55 Length=1219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || | || ||||| ||||||||| ||| || || || Sbjct 823 AATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATC 882 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | ||||| || ||| ||||| || ||| | || ||||| Sbjct 883 AGATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCA 942 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||||||||||| || || || ||| | || ||| | |||| | | || ||||| Sbjct 943 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAA 1002 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||| || || || || ||| |||| | ||| | |||| || Sbjct 1003 CATCCAAAAGGAGTCAACCCTTCACTTGGTTCTCAGACTCAGAGGTGG 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425301937119360