Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq7211 203 2e-47 seq11890 201 6e-47 >seq7211 Length=2975 Score = 203 bits (224), Expect = 2e-47 Identities = 334/472 (71%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATG-CCAATCAGCATTTTGCTCAACT-TTCTCCATAAATAAATCTG 25946 || ||||| | | |||| ||| || |||| | |||||| ||||| || ||||| |||| Sbjct 1619 TTGGGACACA-TCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTC-ATGAATAAGTCTG 1676 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 ||||||| | ||||| || | |||||| ||||| | |||||||| || ||||||||| Sbjct 1677 GAATCCAGAGAGCATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTC 1736 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | || | | ||| || ||||||||| ||||||||||| | ||||| |||||| || Sbjct 1737 TGAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCAC 1796 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 |||||||||| || || |||||||| || || |||||||| ||||| ||||| || | || Sbjct 1797 CTTTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCA 1856 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 | || | |||||| |||| |||||||||| | ||| | || | | | || | Sbjct 1857 TAGGTATCAATCCATTTGAGTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGA 1916 Query 26187 TATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGC--ACAATCTG 26243 | || ||| ||| | ||| || || ||||| ||||| ||| |||| |||| Sbjct 1917 TGTC-TGACACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCTT 1975 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 | | || || || || || | || ||| ||||||| |||||| || |||||| Sbjct 1976 AGA--GTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAAC 2033 Query 26304 ATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGT 26355 | || | | | ||||| |||||||| | ||| || ||||| ||||| Sbjct 2034 TCATTTAAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGT 2085 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 24994 CAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGA 25053 ||||||| |||| || ||||||||| | | |||||||||| | | | || || Sbjct 751 CAAGTGTGGGTTTACACAAACAAATTCTCCTGCTAGAACTCTTCTTGTGTAAACATTAGA 810 Query 25054 AGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCAT 25113 |||| | || ||||| |||||||||||| ||||| | || || || || |||||||| Sbjct 811 AGTGTACGGCTCAAAGGTTTCATTATTTCCCAAGATCTATGATGTGGAAGCAGTTGGCAT 870 Query 25114 TAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATC 25173 || || | ||| || ||||| || | ||| | | |||| | ||||||| || Sbjct 871 AGGGGCAATGAGTAGAGAGTTTCTAGCTCCGTGTTTCATCACATCTTATCTTAATTTCTC 930 Query 25174 CCAATC 25179 |||||| Sbjct 931 CCAATC 936 >seq11890 Length=3034 Score = 201 bits (222), Expect = 6e-47 Identities = 252/343 (73%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTC-AACTTTCTCCATAAATAAATCTG 25946 |||||||||||| | | ||||||| | || | ||| || ||| ||| || | ||||| Sbjct 1604 ATTTGGACAGAAAAGAGTCCAATCACCGTTGT-CTCTTACCCTCTTCATGAAAAGATCTG 1662 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 ||| ||| | ||| | ||||||||||| ||||| |||||||||||| || |||||| Sbjct 1663 GAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTTC 1722 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | || | | ||| ||||| | ||| | |||||||| ||||| |||||||| || || Sbjct 1723 TGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAAC 1782 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 | ||||| ||||| |||||||| || || ||||| |||||||||||||||||| | | || Sbjct 1783 CCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGCA 1842 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 | ||||| | |||| |||| ||| || || | | || | ||||| | ||| | Sbjct 1843 TGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCTGTGGCTCTGA 1902 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 ||| |||| || || || | ||||||||| | || ||||| Sbjct 1903 TATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAAT 1945 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 24983 AGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT--TA 25040 |||||||||| ||| || ||| | | | ||||| || | | |||||||| || Sbjct 732 AGATCTCTAACCAAATGAGGATTGACGCACACGAATTCACCGGCAAGTACTCTTCTGGTA 791 Query 25041 TTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAG 25100 | ||| ||||| ||| |||| || |||| ||| ||||| ||||||||||| ||||| | Sbjct 792 TAGAT--GTTTGTTGTGTATGGCTCGAAACTTTCGTTATTACCTAAGATTTGGGAAGTTG 849 Query 25101 ATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTT 25160 | || |||||||| || | || || |||||||| ||| | || | | || Sbjct 850 AAGCAGTTGGCATAGGAGCAACCAAAAGTGAATTTCTTGCACCGAACTTGATGACATCAG 909 Query 25161 GTTTTAATTTATCCCAATC 25179 | | |||||||||||||| Sbjct 910 CTCTCAATTTATCCCAATC 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252978814928000