Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq16138 105 8e-18 >seq16138 Length=3461 Score = 105 bits (116), Expect = 8e-18 Identities = 325/497 (65%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || || || ||||| ||||| ||||| ||||| |||| ||||| || Sbjct 838 ACTCCAATTGGGCCAACACCTGGACCACCACCACCATGGGGAATTGAGAAAGTCTTGTGC 897 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || | || | ||||| || ||| | ||| | | || | | ||| Sbjct 898 AAGTTCAAGTGGCCAACATCGGCTCCAACAAATCCTGGGGAAGTCAATCCCATTTAGGCA 957 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || |||||||| | ||| || || || || || | ||| | || | || || Sbjct 958 TTGAAGTTAGCACCATCCATATAGACTTGCCCTCCGTTTTTATGGATAATATCGCACATT 1017 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT-AATACATGA 138421 | ||| | | ||| || ||||||||||| ||||||||||||||||| ||| || | Sbjct 1018 TCAATGACGGCAGCTTCGAAAACACCATGAGTGGATGGATATGTAATCATGAATGCA-GC 1076 Query 138422 GAGTTCAAATGTATTCATGAT----TGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGC 138477 | || ||| | ||| | ||||| | | ||||||| || || ||||| | Sbjct 1077 CAATT----TGTCCTTATGCTCTTCAGCTTTTTGTTTAAGATCTTGGACATCAATGTTAC 1132 Query 138478 CATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGA-CTGCACTAGCAGGA 138536 ||| |||||||||| ||| | || | ||||| | | | | || | || || || Sbjct 1133 CATTGGCATCACACTTTACAACAACGATTTTCA-TGTTACAAAGAGCAGCTGAGGCTGGG 1191 Query 138537 TTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCT 138596 || || ||||| ||||| | || || || || | || ||||| ||| ||| | | Sbjct 1192 TTGGTGCCATGAGCTGAAACAGGAATAAGGCAAATATCTCTTTGGAGATCCCCTCTGCTT 1251 Query 138597 TGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGT 138656 | ||||||| | || || | | ||||||||| || || | | ||| | ||| ||| Sbjct 1252 TCATGATATTTCTTAATAGCCATTAATCCTGCATATTCTCCGTTGGCTCCAGAGTTTGGT 1311 Query 138657 TGTAATGATATAGAATC 138673 || | ||| || | ||| Sbjct 1312 TGAAGTGAGATTGCATC 1328 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/274 (67%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 139285 CATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTT 139344 || ||||| | || ||||| || || || |||| || ||||| || || ||| || | Sbjct 2000 CAAAGAATGCTGAGATATTAGCAAGAAGAGCTTAGGCAGTGCAAATATTTGAGGTAGCCT 2059 Query 139345 TGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTT 139404 ||||||||||||| || || ||||| |||| ||||| | ||| || || || || | Sbjct 2060 TGTCTCTTCTAATGTGTTGTTCTCTGGTTTAAAGTGCCATTCTATAGGCCTTATCTCCAT 2119 Query 139405 CGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTG 139464 | ||| || ||| | || | || || || |||||||| ||| ||| | Sbjct 2120 GGGAATCCTTAGATACACCAATAAGACGACCTGGCATTTTTCTCTTGAACTCATCTCTGC 2179 Query 139465 TTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATAC 139524 || | | | | | ||||||||| || || |||| || | || || ||||| ||| Sbjct 2180 AAGCCATGTAACCTGGATGAGGACCACCAAATGCCATTGGCACTCCGAATCTTTG--TAC 2237 Query 139525 T--ACCTACAGCAATATCAAATCCCCACTCACCT 139556 | ||| || |||||||| | |||| |||||| Sbjct 2238 TGAACCGACTGCAATATCCACTCCCATTTCACCT 2271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578854808396800