Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11890 197 2e-45 seq15602 104 3e-17 >seq11890 Length=3034 Score = 197 bits (218), Expect = 2e-45 Identities = 857/1338 (64%), Gaps = 48/1338 (4%) Strand=Plus/Minus Query 75304 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAG 75363 ||||| ||| ||||| || || || ||||| |||||||| |||| ||| | ||| || Sbjct 2075 GTTCACTCATGCAACCCCTACTCTTTTCAACGCTGGTACCCCAAAACCATAAATGAGTAG 2016 Query 75364 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 75423 || |||||| | | ||||| ||||| || |||| || |||| ||||||| | | Sbjct 2015 CTGTTTCCTTTTAATGATGAAGGATGACTCTATTCACGGAATATATGATACTCTTAAGAA 1956 Query 75424 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC 75483 ||| || || ||| | ||||| || |||| | | || || | ||||| Sbjct 1955 CGTTGCTTTGATTTCTAAGAGTGCTGGTGGAGTTGGACTTGCTGTTCACAATATCAGAGC 1896 Query 75484 CAATAAATCTCGT---ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 75540 || | | || || ||| || ||||| || ||| |||| || |||| ||||| Sbjct 1895 CAC---AGGTAGTTACATCAAGGGAACTAATGGACACTCAAATGGACTTGTTCCCATGCT 1839 Query 75541 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTC 75597 | || || || | || || | ||||| | |||| || | | ||||| || Sbjct 1838 CAGAGTTTTCAATGAAACTGCTAGATATGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTC 1779 Query 75598 CATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACT 75657 |||| ||||||| || ||||||||||| ||| || | || |||||| | | || Sbjct 1778 ATTCGCTATCTACTTAGAGCCATGGCATGCTGATGTCTTTGACTTCCTTCAACTCAGAAA 1719 Query 75658 CAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 ||||| || | ||||| | ||||||| | || | | || ||| ||||||| Sbjct 1718 GAACCATGGAAAAGAAGAATAAAGAGCTAGAGATTTATTCTTTGCTCTCTGGGTTCCAGA 1659 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGC 75777 |||||||||||| |||| || ||| | ||| |||||||||||||| | | || Sbjct 1658 TCTTTTCATGAAGAGGGTAAGAGACAACGGTGATTGGACTCTTTTCTGTCCAAATGAAGC 1599 Query 75778 ACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGA 75837 ||| |||| || | || || |||||||||||| | || || || |||||| Sbjct 1598 CAAAGGCCTCTATGAAGTTCACGGAGAAGAGTTTGAAGCCTTATATACTAAATATGAATC 1539 Query 75838 GGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAAT 75896 | |||| | | |||| | | || | || ||||| | | ||| | || Sbjct 1538 CCAAGGTATTGGAAGAAAGACTAT-CAAGGCAATGAAACTTTGGGAATCAATTATTGAAA 1480 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 | | ||||| || || || || |||||||| || ||| ||| || | Sbjct 1479 GTTAAATTGAGACAGGTACTCCCTACATGCTTTATAAAGATCACGCTAATGGAAAATCAA 1420 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 ||||||||||| | |||||||| ||||| || ||||| || || || | || || | Sbjct 1419 ACCAAAAGAATCTTGGAACAATAAAGAGTTCTAATCTATGTTGTGAGATCATTGAATATA 1360 Query 76017 CAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA 76076 | | ||||| | ||||| |||||| | || ||||| | || || | || | | Sbjct 1359 CTTCTCCAGATGAAATTGCTGTGTGCAATCTTGCCTCAATATCACTCCCTAGATACAT-A 1301 Query 76077 ATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCA 76136 | || || || ||||||||||| ||||||||| || | || ||||||| Sbjct 1300 ACAAATGGAGTC-----TTTGATTATGAGAAACTTCATAAAGTAACTTTCTAAGTTACCA 1246 Query 76137 AAAATCTAAACCGAGTCATTGACAGAAATTTTTATCC---CGTTGAGACTGCGCGAAAGT 76193 | ||||| ||| || ||||||| | |||| ||||| || |||| || ||| | Sbjct 1245 AGAATCTTAACAGAATCATTGATGGCAATTACTATCCTTGCGATGAG---GCCAAAAACT 1189 Query 76194 CTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-T 76252 | |||||| |||| ||||| || ||| | |||||| | || || || |||| |||| Sbjct 1188 CAAATATGAGACATAGACCAATCGGTATCGGTGTTTAGGGACTAGCTGATGCCCTTATGC 1129 Query 76253 TTGTGCCGCTACGCATTTGATTCAGATGA---AGCCAAGGAGATGAATGCTCGTATCTTT 76309 || | | | ||||||| |||||| |||| | || | ||| || ||| Sbjct 1128 TTCTCAAAATTC-CATTTGA---AGATGAGAGAGCCTATCAGTTCAATCAAGAAATTTTT 1073 Query 76310 GAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCC 76369 ||||| || ||||| ||||| |||| | ||| ||| | || ||| | || | Sbjct 1072 GAAACAATTTATCATGCATCTATGGAATCAAGTATGGAACTTGCCAAAGTAGAGGGGGCT 1013 Query 76370 TATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAA 76429 ||| | | || || ||||| || || | | || | |||| | | |||| Sbjct 1012 TATCAATCTTTCCCAGGATCTCCATTAAGTCAGGGTCTATTCCAATATGATCT-TTGGAA 954 Query 76430 GGTGAAA---CCAAGCTCAA----CTACGACTGGGATGTTCTCA-AG--GAACGCATCAA 76479 | ||| |||| ||| ||||| |||||| | | || || ||||| Sbjct 953 TGAAAAACTTCCAA---CAAATAGATACGATTGGGATAAATTGAGAGCTGATGTCATCA- 898 Query 76480 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 76539 || ||| | || |||||| | || || |||||||| || || || | || Sbjct 897 --AGTTCGGTGCAAGAAATTCACTTTTGGTTGCTCCTATGCCAACTGCTTCAACTTCCCA 840 Query 76540 AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAAC 76599 |||||| |||||||| ||| | || || |||||||||||||||||||| |||||| Sbjct 839 AATCTTAGGTAATAACGAAAGTTTCGAGCCATACACAACAAACATCTATACCAGAAGAGT 780 Query 76600 CCTCGCAGGTGAGTTTGT 76617 || || ||||| || || Sbjct 779 ACTTGCCGGTGAATTCGT 762 >seq15602 Length=1555 Score = 104 bits (114), Expect = 3e-17 Identities = 162/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 64994 AAGCCATCCAAACTGTACCATGTATT-GAGAAGAAGGCGAAATGGGCAATGAAATGGTTT 65052 |||| |||| | | ||||| ||| | | || || || | |||||| | |||||| || Sbjct 821 AAGCTGTCCACAATATACCA-GTAGTAGCTAAAAAAGCTGATTGGGCACTCAAATGGATT 879 Query 65053 GACACAAAGTCTCGCTCC-TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTAT 65111 | | || | ||||| ||||||||| | ||| | || || || ||| ||||| || Sbjct 880 GG---AGAGAC-CGCTCAATTCGCCGAGAGACTTGTAGCCTTCGCAGCTGTTGAGGGCAT 935 Query 65112 CTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 ||||| || || || |||||| | |||| ||| | |||||||| ||||| |||||||| Sbjct 936 ATTCTTTTCTGGCTCCTTCTGCTCAATTTTCTGGCTAAAGAAGCGTGGTCTTATGCCAGG 995 Query 65172 CCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || |||||||||||| | ||||| |||| || ||| | ||| Sbjct 996 TCTCACATTCTCAAATGAATTGATTTCAAGAGACGAAGGTATGCAC 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596421650739200