Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18108 134 2e-26 seq5287 129 1e-24 seq18584 107 3e-18 seq55 105 1e-17 seq6367 100 5e-16 >seq18108 Length=1037 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||||| || ||||| | ||| | || | ||||| | || |||||||| ||| Sbjct 861 CCTCCTCTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCAGAT 802 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 ||||||||| || || | ||||| || ||||| |||| ||||||| ||| | || Sbjct 801 AACGTTCTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGATGGA 742 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||| ||||| |||||| | || || || ||| |||| || | ||| || Sbjct 741 ATACCTTCTTTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCCACG 682 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| ||||| ||||| |||| ||| | ||||| |||||||| Sbjct 681 GCAAGAGTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || || |||| || | ||| || ||||| | | || Sbjct 642 ATTTGCATACCACCTCTGAGTCTCAGCACCAAGTGGAGTGTTGCTTCTTTTTATACGTTG 583 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || ||||| || || || |||||||| || || ||||| || | ||||| |||| Sbjct 582 TAATCTGATAAAGTCCTGCTGTCCTCTAATTGCTTGCCTGCAAATATAATTCTCTATTGA 523 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||| || | |||||| || |||| || |||| ||| | | ||||| ||| | Sbjct 522 TCAGCGGGGACTCCTTCCTTGTCTTAGATCTTGGCTTTCACGCTCTCAATAGAGTCGCTA 463 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||| ||||| |||||||| || || || ||| |||||||||| ||| Sbjct 462 GCCTCGCATTCGAGAGTAATAGTTTTTCCAGTGAGGGTTCGGACAAATATTTACAT 407 >seq5287 Length=1089 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 || || ||||| ||||| | || || |||| ||| | |||| ||||| || || Sbjct 420 ATCTACATACCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTG 361 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| |||| ||||| || ||||| | ||||| || || || | |||||||||| Sbjct 360 TAGTCAGATAGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGA 301 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || |||| || | |||| |||||| || || Sbjct 300 TCGGGTGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGAT 241 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| |||| || ||||| || || |||| || ||||| || |||| ||| Sbjct 240 GGCTCAACATCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACAT 185 >seq18584 Length=3078 Score = 107 bits (118), Expect = 3e-18 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| | ||||| ||| | |||| ||||| || |||||||| | Sbjct 2389 CCTCCTCTTAATCGTAATACCAAATGGAGTGTACTTTCTTTTTCTATTTTATAGTCATTT 2330 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || | | | ||| ||||| | | ||||||||| || | ||||| ||||||||||||| Sbjct 2329 AATGATAAATGATCTTCTAACTATGATCCGGCAAATATGAGTCTCTATTGATCAGGAGGT 2270 Query 193254 ATTCCTTCTTTATCTTGTAT-TTTGGTTTTTATATTTAAAAT--AGTATCGGAAGACTCA 193310 ||||| ||||| || || || || |||| ||| || | | | ||| ||| || Sbjct 2269 ATTCCCTCTTTGTCCTGAATCTTAAGTTTAAATAATTCGATTTCATCATC-TAAGTAGCA 2211 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356 | | || ||||||||| || || ||||| ||||| |||||||||| Sbjct 2210 A--TGTATAGTTATAGTCTTTCCAGTTAGTGTTTTCACAAATATTT 2167 >seq55 Length=1219 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| ||||||||||| | || ||| || | ||| | || | ||| || ||| || Sbjct 603 ATTTACATACCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTG 544 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| | ||||| ||| || | ||| ||||| ||||| || | ||| |||||| Sbjct 543 TAGTCGCTGAGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGA 484 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || || | || | ||| || || || || Sbjct 483 TCGGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGAT 424 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| || || || || || || || || || || || | ||| Sbjct 423 GGCTCAACGTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 >seq6367 Length=732 Score = 100 bits (110), Expect = 5e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || || ||||| ||| || || | ||||||||||| || | ||| Sbjct 446 ATGTTGTAATCAGACAAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTT 505 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || ||||||||||| || || |||| || | || || ||| Sbjct 506 TGTTGATCAGGGGGGATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTA 565 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| || || ||||| ||||| ||||| || | || || || || || | | Sbjct 566 TCAGAGGGCTCGACATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTAC 625 Query 193359 ATTTT 193363 ||||| Sbjct 626 ATTTT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899431285708800