Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq15602 178 2e-39 seq6367 107 3e-18 seq18108 91.5 2e-13 seq5287 91.5 2e-13 >seq15602 Length=1555 Score = 178 bits (196), Expect = 2e-39 Identities = 379/564 (67%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 |||||| ||||| ||||| | |||||| ||||| || || ||||| || || || | Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | ||| | || |||||||| || || || ||| | ||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAA 937 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 ||| |||||||| ||||| |||| | ||| || || || || | | || Sbjct 936 TATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCGAA------TTGAGCGGTCTC 883 Query 18337 T---ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNA-TACACGGTATACTCTCTATAG 18392 | |||||||| ||||||| || ||| | ||| |||||| | | | || Sbjct 882 TCCAATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACT-GGTATATTGTGGACAG 824 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | || || | | |||||||||| | || | || ||||||| || | | ||||| Sbjct 823 CTTTGAAGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAAT 764 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 | ||||| || ||| | ||||| ||||| || | ||| || |||||||||| | Sbjct 763 AAGTTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAG 704 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | || || || | | ||||| | ||||||| ||||||||||||||||||| || Sbjct 703 GCACTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAG 644 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 || || || || | ||||| ||||| || ||| | || || || ||||| | | || Sbjct 643 CAGCAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCC 584 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG--ATTCGGC 18690 | || | ||||| | | |||||||| |||||| || ||||| || | | ||| | Sbjct 583 AATCCTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTG-- 526 Query 18691 CTGTTTGTACATTTTATAAATATC 18714 | |||||||||||| | ||||| Sbjct 525 ATCTTTGTACATTTTCCAGATATC 502 >seq6367 Length=732 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||| | || || | || || ||||| || || |||||||| | || ||||| Sbjct 630 AAAATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCC 571 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| || ||||| || || || || ||||||||||| || || || || Sbjct 570 TCTGATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGAT 511 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||| | || | |||||| ||| || | |||||| ||||| || || ||||| Sbjct 510 CAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTAC 451 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||||| | || ||||| || || || ||| | ||||| |||| Sbjct 450 AACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGGTG 399 >seq18108 Length=1037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| |||||||| | ||| | ||||||||||||||||| | ||| ||| | | Sbjct 407 ATGTAAATATTTGTCCGAACCCTCACTGGAAAAACTATTACTCTCGAATGCGAGGCTAGC 466 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || |||| | ||||||| || || |||| || ||||| | || | || ||| Sbjct 467 GACTCTATTGAGAGCGTGAAAGCCAAGATCTAAGACAAGGAAGGAGTCCCCGCTGATCAA 526 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 | ||| | || | ||| || ||||| | || || | ||| |||||||||||||| || Sbjct 527 TAGAGAATTATATTTGCAGGCAAGCAATTAGAGGACAGCAGGACTTTATCAGATTACAAC 586 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| ||||| || || || || || ||| | ||| | ||||| ||| Sbjct 587 GTATAAAAAGAAGCAACACTCCACTTGGTGCTGAGACTCAGAGGTGGT 634 >seq5287 Length=1089 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| |||||||||| |||||| ||||| || || || || || || || Sbjct 470 TCCGATACCATTGAAAACGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGAT 529 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||| | ||| | |||| ||||||||||| | |||||| ||||| | |||||||| Sbjct 530 CAATAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTAC 589 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||| || ||| || | || || || || || ||||| | ||||| ||| Sbjct 590 AATAT-TCAAAAGGAATCTACTCTCCACTTGGTCCTAAGACTCAGAGGAGGT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731690495744000