Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6367 120 6e-22 seq5287 113 9e-20 seq55 104 5e-17 seq18108 87.8 4e-12 >seq6367 Length=732 Score = 120 bits (132), Expect = 6e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||||||| | || || || || | ||| | ||||| ||| || |||||||| Sbjct 400 ACCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 459 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| | |||| ||||| | || || |||||||| | ||| ||||||||||| || Sbjct 460 CAAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGG 519 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||||||||| || || || || || || || | ||| || | || || Sbjct 520 GATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGAC 579 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||||||| || ||||| || || || || | || |||| |||||| Sbjct 580 ATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTT 630 >seq5287 Length=1089 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| || | || || ||||| | ||||| ||||| ||| || || ||| Sbjct 414 ATACCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCA 355 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||| | || || || | || ||||| ||||| | |||||||||||| ||| Sbjct 354 GATAGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGT 295 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| |||| || || | || Sbjct 294 GGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCA 235 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 || |||| ||||| || || ||||||||||| || Sbjct 234 ACATCTAAGGTAATAGTCTTTCCAGTTAATGTCTT 200 >seq55 Length=1219 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| || | | |||||||| | ||| | ||| ||| || || || || || Sbjct 597 ATACCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGA-ATGTTGTAGTC 539 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | |||| |||| || | ||| || ||||||||||| | ||| |||||||| || Sbjct 538 GCTGAGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGG 479 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| || ||||| || ||| || ||||| || | ||||| | || Sbjct 478 TGGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTC 419 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | || || | || |||| ||| Sbjct 418 AACGTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 >seq18108 Length=1037 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || ||||| | ||| || | || | ||| | ||||| || |||||| ||| Sbjct 408 ATACCGCCCCTAAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCA 349 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || || ||||| ||||||||||| | |||||||| || | | Sbjct 348 GAGAGGGTTCTGCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGTCGGCT 289 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 ||||| ||||| || ||||| || || Sbjct 288 GGTATGCCTTCCTTGTCTTGGATCTT 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984229745184000