Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5287 109 1e-18 seq6367 105 1e-17 seq55 100 5e-16 seq9148 86.0 1e-11 seq15602 84.2 4e-11 >seq5287 Length=1089 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| |||| || || ||||| | ||||| ||||| || || || || Sbjct 414 ATACCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCA 355 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || |||| || || | || ||||| || || | ||||||||| || ||| Sbjct 354 GATAGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGT 295 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| ||||| || || | || Sbjct 294 GGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCA 235 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||||| || || ||||||||||| || | ||| || | ||| Sbjct 234 ACATCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACAT 185 >seq6367 Length=732 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||||| || || || || | ||| | ||||| || || ||||| || Sbjct 400 ACCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 459 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | | || ||||| | || || ||||| || | ||| ||||| ||||| || Sbjct 460 CAAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGG 519 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||||||||| || || || || || || || ||||| || | || || Sbjct 520 GATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGAC 579 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||||||| || ||||| || || || || | ||| |||| |||||| Sbjct 580 ATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTT 630 >seq55 Length=1219 Score = 100 bits (110), Expect = 5e-16 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| | |||||||| | ||| | ||| || ||| || || || Sbjct 597 ATACCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTC- 539 Query 171900 GATAAAGATCGTTC-GTCATC--CAA-TTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 | | || |||| | |||| ||| ||| || |||||||| || | ||| ||||| || Sbjct 538 GCT---GAGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATC 482 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| |||||||| || ||||| || ||| || ||||| || || ||||| | Sbjct 481 GGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGG 422 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||| || ||||| | || || | ||| |||| ||| Sbjct 421 CTCAACGTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| |||| | || || || | || | ||| || || ||||| ||||| Sbjct 1051 ACCACCTCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGA 992 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | | || || | ||| |||||||| || || | ||| ||||| || ||||| Sbjct 991 AAGAGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGG 932 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || || | || || || || || ||||||||||| | || || Sbjct 931 GATTCCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAAC 872 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || |||||||| ||||| || | || || | ||| || |||||| Sbjct 871 ATCGAGGGTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 >seq9148 Length=1756 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 239424 AGGAAAAATAATTGGATT---ATCAAAGGGATTACATGGATTTCATATACACGAATATGG 239480 |||| ||||| |||||| | |||| || ||||||||| ||||| ||||||||||| Sbjct 514 AGGATAAATATCTGGATTGACACCAAATGGCCAACATGGATTCCATATTCACGAATATGG 455 Query 239481 AGATTTAAGCAATGGTTGCACATCAGCTGGTGAACATTATAATCCTTT 239528 ||| ||| ||||||||||| ||| ||| | |||||||| ||||| Sbjct 454 AGACTTATCTAATGGTTGCACCTCACTTGGAGGCCATTATAACCCTTT 407 >seq15602 Length=1555 Score = 84.2 bits (92), Expect = 4e-11 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || | ||| || ||||| || || | ||||||||| || || || |||||||| Sbjct 1064 TAGAGGAGACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAG 1005 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTA-CT 39235 || || | |||||||| | || | ||| || ||||| || ||||| ||| || | | Sbjct 1004 AATGTGAGACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGA-GCAGAAGGAGCC 946 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 39295 |||||||||||| ||||| ||| || || |||| | ||| ||| ||| | Sbjct 945 AGAAAAGAATATGCCCTCAACAGCTGCGAAGGCTACAAGTCT--CTCGGCGAATTGAGCG 888 Query 39296 ATCATCTAAAATCCAATTTATGGCCCAATCTGCTTTTTT 39334 || ||| |||||| || | |||||||| |||||||| Sbjct 887 GTC-TCTCCAATCCATTTGAGTGCCCAATCAGCTTTTTT 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904911526272000