Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq16721 143 8e-29 seq16464 143 8e-29 seq11890 125 2e-23 >seq16721 Length=5596 Score = 143 bits (158), Expect = 8e-29 Identities = 319/466 (68%), Gaps = 21/466 (5%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATT-CGGTTTGCTTAAA 288941 || || ||||| ||||| ||||||||||| ||||| | || |||| | | | | ||| Sbjct 2685 TCCAAAATATCTGCTCTATTTGTTGCTGCTAATACTATAACTGATTCCTCTGTACCGAAA 2626 Query 288942 TCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCT 289001 |||||||| || | |||||| || || | || |||||||||||| ||| Sbjct 2625 -CCATCCATTTCGACCAAGAGTTGATTGAGAGTATTATCTCTTTCATCATTTCCACC--- 2570 Query 289002 TGAA-TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA 289060 ||| | |||| | ||| |||||| | || ||||| || || |||||||| || | Sbjct 2569 -GAATTTACCC---TGTCTC---TTTTTAGCTACTGCATCTATCTCATCAATGAAGATAA 2517 Query 289061 CACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 | | |||| |||| ||| || | |||| |||||||| | || ||||| | | Sbjct 2516 TAGATGGAGCCTTTTCTCTTGCTTTCTTGAATAGATCTCTTACTCTTGAAGCTCCTACTC 2457 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 | ||| |||| ||||| || || ||| | || | |||| | ||| | |||| || ||| Sbjct 2456 CTACAAACATCTCTACGAAGTCTGAACCTGAGA-TTGACAAGAAAGGTACACCAGCCTCG 2398 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || || ||| | |||| ||||||||| || ||||| ||||| || | | ||| || Sbjct 2397 CCAGCCACAGCCTTAGCCAAAAGTGTCTTTCCAGTTCCTGGTGGACCAACAAGGAGAGCT 2338 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 || |||| | || ||| ||| || || |||||||| || ||| | || || | Sbjct 2337 CCTCTTGGAATTTATGCTCCA--AGCTTTTGATATTTCTTTGGATCCTTAAGGAAATCAA 2280 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACAT-CCTGCTACAT 289342 ||| ||| | || || ||||| || | || ||| ||||| |||| Sbjct 2279 CAAATTCTTGAACCTCTTATTTGGCTCCCTC-CATACCTGCAACAT 2235 >seq16464 Length=5609 Score = 143 bits (158), Expect = 8e-29 Identities = 319/466 (68%), Gaps = 21/466 (5%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATT-CGGTTTGCTTAAA 288941 || || ||||| ||||| ||||||||||| ||||| | || |||| | | | | ||| Sbjct 2925 TCCAAAATATCTGCTCTATTTGTTGCTGCTAATACTATAACTGATTCCTCTGTACCGAAA 2984 Query 288942 TCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCT 289001 |||||||| || | |||||| || || | || |||||||||||| ||| Sbjct 2985 -CCATCCATTTCGACCAAGAGTTGATTGAGAGTATTATCTCTTTCATCATTTCCACC--- 3040 Query 289002 TGAA-TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA 289060 ||| | |||| | ||| |||||| | || ||||| || || |||||||| || | Sbjct 3041 -GAATTTACCC---TGTCTC---TTTTTAGCTACTGCATCTATCTCATCAATGAAGATAA 3093 Query 289061 CACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 | | |||| |||| ||| || | |||| |||||||| | || ||||| | | Sbjct 3094 TAGATGGAGCCTTTTCTCTTGCTTTCTTGAATAGATCTCTTACTCTTGAAGCTCCTACTC 3153 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 | ||| |||| ||||| || || ||| | || | |||| | ||| | |||| || ||| Sbjct 3154 CTACAAACATCTCTACGAAGTCTGAACCTGAGA-TTGACAAGAAAGGTACACCAGCCTCG 3212 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || || ||| | |||| ||||||||| || ||||| ||||| || | | ||| || Sbjct 3213 CCAGCCACAGCCTTAGCCAAAAGTGTCTTTCCAGTTCCTGGTGGACCAACAAGGAGAGCT 3272 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 || |||| | || ||| ||| || || |||||||| || ||| | || || | Sbjct 3273 CCTCTTGGAATTTATGCTCCA--AGCTTTTGATATTTCTTTGGATCCTTAAGGAAATCAA 3330 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACAT-CCTGCTACAT 289342 ||| ||| | || || ||||| || | || ||| ||||| |||| Sbjct 3331 CAAATTCTTGAACCTCTTATTTGGCTCCCTC-CATACCTGCAACAT 3375 >seq11890 Length=3034 Score = 125 bits (138), Expect = 2e-23 Identities = 575/903 (64%), Gaps = 17/903 (2%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| | |||||||| || || ||||||||||| || || || | |||||| ||||| Sbjct 1362 TATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCTTTTGGTTT 1421 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||||| | ||| ||| || || || ||||| || || |||||||| || | Sbjct 1422 GATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTCTCAATTTAACTT 1481 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | ||| | ||| || | || || || ||| | | |||| || Sbjct 1482 TCAATAATTGATTCCCAAAGTTTCATTGCCTTGATAGTCTTTCTTCCAATACCTTGGGAT 1541 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870 |||||||| |||| | | | | || || |||| | ||| || || | Sbjct 1542 TCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTGGCT 1601 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCA 155930 | || || || || || | |||| || | |||| | || ||| || | ||| Sbjct 1602 TCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATCT 1661 Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTC 155990 |||| | |||| |||| | || || || || | || || | || || ||||| Sbjct 1662 GGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTT 1721 Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050 | || | | ||| || | ||||| ||| |||||| | || ||||| || | Sbjct 1722 CTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAA 1781 Query 156051 CCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107 || || ||||| ||||| || || ||||| | |||||| | |||||| || | ||| Sbjct 1782 CCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGC 1841 Query 156108 ATAGGAATAATACCATTGGAAGTG-CCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 || |||| || ||||| || ||| ||||| ||||| || | ||| | | | Sbjct 1842 ATGGGAACAAGTCCATTTGA-GTGTCCATTAGTTCCCTTGATGTAACTACCTGTGGCTCT 1900 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 | ||| |||| | ||||||| ||||| | | |||||||| ||| | ||| Sbjct 1901 GATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCAAAGCAACGTTCTT 1960 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATC-TTC--CATTGATAGTAGATAGCACGA 156283 | ||||| | || || | |||||| ||||| ||| |||| | || | | ||| Sbjct 1961 AAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAAAAGGAAACAGCT--- 2017 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 ||| | || ||| ||| || ||||||||||| || ||||| ||||||||| | || | Sbjct 2018 ACTCATTTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAACCA 2077 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAAT--CTTC-TCAAGATTAGACCCGTGAAT 156400 ||| | ||| | | |||||||| ||| | | |||| || || ||| || Sbjct 2078 TCTATCACTCATTAAGTTATATGTCTC---AATTGCAGCATCAATATCAGTTTTGTGGAT 2134 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | || || || | ||||||||| || | || || ||| ||||| | | Sbjct 2135 ACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCTTTCAACGATCTTTCCATTGACTTT 2194 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTT 156520 || ||| ||||| ||||| ||||| ||| | ||||| ||||| | | ||||||| || Sbjct 2195 CAAAAGATATGCTCGTTCAAGAGTCTTATATCCGAAGTAATCGTAGTCATAATCACGTTT 2254 Query 156521 GTA 156523 || Sbjct 2255 ATA 2257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471443463966080