Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq55 129 5e-25 seq6367 125 6e-24 seq5287 120 3e-22 seq18108 93.3 4e-14 seq7211 87.8 2e-12 >seq55 Length=1219 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || |||||||| || ||||| ||||| || || |||| | Sbjct 824 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGA-GCCATC 882 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || |||||| | ||||| |||||||| || |||||||| Sbjct 883 AGATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCA 942 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | ||||| || || || || || |||||| |||| | ||||| ||||| Sbjct 943 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAA 1002 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||| || || || |||||||| Sbjct 1003 CATCCAAAAGGAGTCAACCCTTCACTTGGT 1032 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || || || || |||||||| || | || || || || | Sbjct 140 ATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCT 199 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||||||||| || || ||||||||| Sbjct 200 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 259 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || || || || ||||| |||| | | || || ||| Sbjct 260 CAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTACAAC 319 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || || ||||| Sbjct 320 ATCCAAAAGGAGTCAACTCTCCATTTGGT 348 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| | || || || |||||||| || || || ||||| || || | | Sbjct 596 ATGTAAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGAGCCTTCT 655 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 656 GACACTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 715 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || ||||| || || || |||| | | || |||||| Sbjct 716 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAAC 775 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || |||||||| Sbjct 776 ATCCAAAAGGAGTCTACCCTCCACTTGGT 804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || || || || || || || || || || || || |||| | Sbjct 368 ATGTAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGA-GCCATC 426 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| |||||||| |||||||| || |||||||| Sbjct 427 AGACACCATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCA 486 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | |||||||| || || || || || ||| |||| | | || || || Sbjct 487 ACAAAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAA 546 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||| || || || || || || Sbjct 547 CATTCAAAAGGAGTCAACTCTCCATTTAGT 576 >seq6367 Length=732 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || | || ||||| |||||||| || || || || || | Sbjct 627 ATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCCTCT 568 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | || ||| || || |||||||| || || || ||||| Sbjct 567 GATACCATCGAGAACGTTAAGGCCAA-GATTCAGGATAAAGAAGGTATCCCCCCTGATCA 509 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | ||||||||||| || || |||| ||| |||| | |||| ||||| || Sbjct 508 ACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTACAA 449 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||| ||||| ||||| || || |||||||| ||| || | | ||||| || Sbjct 448 CATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGGTGG 398 >seq5287 Length=1089 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||| ||||||| |||| || || ||||| || || || || || || || || |||| | Sbjct 413 ATGTAGATCTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGATGTTGA-GCCATC 471 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | |||| || ||| || || |||||||| || ||||| || |||||||| Sbjct 472 CGATACCATTGAAAACGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCA 531 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | | | | || || ||||| || || |||| ||| |||| | | |||||||| || Sbjct 532 ATAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAA 591 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||||| || || |||||||| Sbjct 592 TATTCAAAAGGAATCTACTCTCCACTTGGT 621 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || |||||||| ||||| || ||||| || ||| | | Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| | ||||||||||| || || ||||| ||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || || || || || ||||| |||| | ||||| |||||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||||| || || |||||||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGT 849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| | || || |||| || || |||||||| | || || || |||| | Sbjct 185 ATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGA-GCCATC 243 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || ||||||||||| || ||||| || || |||||||| Sbjct 244 TGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCA 303 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | ||||| || || || || | || || |||| | | || || || || Sbjct 304 ACAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAA 363 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || ||||| || || || ||||| Sbjct 364 CATCCAGAAAGAATCTACTCTCCATTTGGT 393 >seq18108 Length=1037 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 24669 AATTATAATAAGTAGTTGATAAACTGATTGATACGATGCAGATCTTTATTAAAACGCTAA 24728 |||| |||||| ||| || ||| | | | | |||| |||| ||| | | ||| || | Sbjct 147 AATTTTAATAATTAGC-GACAAATTAAATTTT--GATGTAGATTTTTGTAAGAACACTCA 203 Query 24729 CCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAA 24788 | || || || ||||| || ||| ||||||| ||| || | || | || || | Sbjct 204 CTGGAAAGACAATTACCCTTGAATGTGAAGCCAACGAGACTTTTGAGTCCGTCAAGGCCA 263 Query 24789 AGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAAC 24848 ||||||||||||| ||||| ||||| |||| |||| | | |||||||| || |||| Sbjct 264 AGATCCAAGACAAGGAAGGCATACCAGCCGACTAACAGAGACTTATCTTTGCTGGCAAAC 323 Query 24849 AGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGAC 24900 || | || ||| |||| | | || || ||||| | || || ||||| || Sbjct 324 AGTTAGAAGATGGCAGAACCCTCTCTGACTATAATGTCCAGAAAGAATCAAC 375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 24721 AACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGT 24780 ||| || || || ||||||||||| |||||| || || | |||| | | || | || Sbjct 424 AACCCTCACTGGAAAAACTATTACTCTCGAATGCGAGGCTAGCGACTCTATTGAGAGCGT 483 Query 24781 AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGC 24840 ||| |||||| ||||||| |||||| | || | |||||| | | | || ||||| Sbjct 484 GAAAGCCAAGATCTAAGACAAGGAAGGAGTCCCCGCTGATCAATAGAGAATTATATTTGC 543 Query 24841 CGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGAC 24900 || || || | ||||| || | | |||||||| ||| | |||| ||| | || Sbjct 544 AGGCAAGCAATTAGAGGACAGCAGGACTTTATCAGATTACAACGTATAAAAAGAAGCAAC 603 Query 24901 ACTACACTTGGTGTTGCGA 24919 ||| ||||||||| || || Sbjct 604 ACTCCACTTGGTGCTGAGA 622 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||| ||| |||||||||| ||||| || || | || || |||| | Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGA-GCCATC 693 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | |||| | || | || || |||||||||||||| || || ||||| Sbjct 694 AGATAACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTC 753 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | | || ||||| || |||||||| || || |||| | || || ||||| Sbjct 754 ACAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAACGTTATCTGACTATAA 813 Query 24883 CATTCAAAAGGAATCGAC 24900 ||| |||| ||||| || Sbjct 814 CATCTAAAAAGAATCAAC 831 >seq7211 Length=2975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 |||||| | |||| || || || | ||| || || || | |||||| ||| | Sbjct 1316 ACAAATCTATTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTA 1375 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 | || || ||||| | ||| | ||| | || || ||| | |||||||||||| Sbjct 1376 AACTCTACGATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTA 1435 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 ||||| |||||||| ||||||||| |||||||| ||||| |||||||| |||| || Sbjct 1436 GATTTTCTGTTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATG 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449786025395200