Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq5287 141 1e-28 seq6367 107 3e-18 seq55 105 1e-17 seq18584 100 4e-16 >seq5287 Length=1089 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || | || || || || || ||| ||||||| || | |||||| Sbjct 419 ATCTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGATGTTGAGCCATCCGATACC 478 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 ||| |||| || ||| |||||| ||| || || || || |||||||||||| | ||| Sbjct 479 ATTGAAAACGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAATAGAGA 538 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 |||||||| || ||||| ||||| || ||| |||||| | ||||||| ||||| ||| Sbjct 539 CTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAATATTCAA 598 Query 146217 AAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| ||| |||| || || || || | |||||||||| Sbjct 599 AAGGAATCTACTCTCCACTTGGTCCTAAGACTCAGAGGAGGTA 641 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| |||| |||||||| ||||| || ||||| | ||||| || | | Sbjct 186 TGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCATCTG 245 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || || || ||| ||| ||||| || ||||||||||||| Sbjct 246 ACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAAC 305 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || || || || || | ||||| || ||||| || | || || || | Sbjct 306 AGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAACA 365 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| ||| ||||||| || || || | |||||||||| Sbjct 366 TCCAGAAAGAATCTACTCTCCATTTGGTCCTAAGACTCAGAGGAGGTA 413 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || || || || || || | || || |||| || | Sbjct 642 TGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA- 700 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | || || || || || | |||||||| ||||||||||| ||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || || |||||||| ||| | || || ||||| | |||| ||||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAAT 146266 || |||| ||||| || | || || || || || | ||||||||| ||| ||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGAGGAGGTCAATGAAT 876 >seq6367 Length=732 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| ||||||| || | ||||| Sbjct 621 ATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCCTCTGATACC 562 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || | || || || || || || ||||||||| || || || |||||||||||| Sbjct 561 ATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGATCAACAAAGA 502 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || ||| ||||| || | ||||| || || ||| Sbjct 501 CTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTACAACATCCAA 442 Query 146217 AAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 |||||||| ||| | || || || || || | ||||||||| Sbjct 441 AAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGGT 400 >seq55 Length=1219 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||| || || | || || || | | Sbjct 141 TGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCTG 200 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || || || ||| |||||||| || ||||||||||||| Sbjct 201 ACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAAC 260 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||||||||| || || || ||| | || || ||||| | | || || || | Sbjct 261 AAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTACAACA 320 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || || ||| ||||||| || | || | |||||||||| Sbjct 321 TCCAAAAGGAGTCAACTCTCCATTTGGTCCTCAGACTCAGAGGAGGTA 368 Score = 104 bits (114), Expect = 4e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAACGATAC 146095 || ||| | || || | || ||||| || || ||| |||| || || | || | || || Sbjct 374 ATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGAGCCATCA-GACAC 432 Query 146096 TATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAG 146155 || | ||||| || ||| || ||| || ||||| || ||||||||||||||||| Sbjct 433 CATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAAAG 492 Query 146156 ACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACA 146215 ||| || ||||| || || ||| | || ||| ||||| | | || || || || || Sbjct 493 ACTTATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAACATTCA 552 Query 146216 AAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 ||| || || ||| |||||||||| | || | ||||| |||| ||||| || Sbjct 553 AAAGGAGTCAACTCTCCATTTAGTCCTTAGACTCAGAGGTGGTATGTAAATCTT 606 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 || |||| ||| | || || | || || || || || || | ||||| || | | | Sbjct 597 TGTAAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGAGCCTTCTG 656 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| |||| || || ||| || ||| ||| ||||| ||||| |||||||||| Sbjct 657 ACACTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAAC 716 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||||||||| || || |||||| | || || ||||| | | || ||||| | Sbjct 717 AAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAACA 776 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || |||| || || | || | ||||| || Sbjct 777 TCCAAAAGGAGTCTACCCTCCACTTGGTTCTCAGACTTAGAGGTGG 822 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || || || || ||||| | ||||| || | || | Sbjct 825 TGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATCA- 883 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| |||| || || || || | || ||||| || |||||||||||| Sbjct 884 GATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCAA 943 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || || || ||||| ||| | || ||| ||||| | |||| ||||| Sbjct 944 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAAC 1003 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAAT 146262 || ||||| || || || | || || || | || | ||||| ||| ||| Sbjct 1004 ATCCAAAAGGAGTCAACCCTTCACTTGGTTCTCAGACTCAGAGGTGGTCAAT 1055 >seq18584 Length=3078 Score = 100 bits (110), Expect = 4e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 146035 AAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATA-ACGAT 146093 ||||||| | |||||| |||| ||||| || || ||||| || | || || | ||| Sbjct 2167 AAATATTTGTGAAAACACTAACTGGAAAGACTATAACTATACAT-TGCTACTTAGATGAT 2225 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || || | ||| ||| || || ||||| || || || || |||||| | Sbjct 2226 GAAATCGAATTATTTAAACTTAAGATTCAGGACAAAGAGGGAATACCTCCTGATCAATAG 2285 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 |||||||| ||||| || | | ||||| ||| || | | |||| || ||||| ||| Sbjct 2286 AGACTCATATTTGCCGGATCATAGTTAGAAGATCATTTATCATTAAATGACTATAAAATA 2345 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 |||||||| || ||||||| |||||||||||||||||||| Sbjct 2346 GAAAAAGAAAGTACACTCCATTTGGTATTACGATTAAGAGGAGG 2389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785971430732800