Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18108 127 2e-24 seq55 118 8e-22 seq6367 98.7 8e-16 >seq18108 Length=1037 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| | || || ||||||| || |||||||||| |||||||| || | Sbjct 862 TCCTCCTCTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCAGA 803 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | | ||||| || |||||||||||| |||| | ||| || ||| | || Sbjct 802 TAACGTTCTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGATGG 743 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| ||||||||||| | ||| | |||| |||| | | || || | || || Sbjct 742 AATACCTTCTTTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCCAC 683 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| ||||| || || ||||||||| ||||||| || ||||| Sbjct 682 GGCAAGAGTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 >seq55 Length=1219 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || || || ||||| ||||| || || | ||| | || Sbjct 351 AGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCGTCC 292 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 |||||||| || ||||| | || | |||||| ||||| || || ||||| ||||||||| Sbjct 291 TCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCT 232 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || |||||| |||| | |||||||| | || || || | || |||||| Sbjct 231 TGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTT 172 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| | ||| ||||| || || ||||| || Sbjct 171 TTGCCAGTAAGGGTCTTAACGAAGATTTGCATATT 137 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || || || ||||| |||||||| || || ||| | || Sbjct 807 AGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCT 748 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||||||||| ||||| | || | |||||| ||||| || |||||||| || || ||| Sbjct 747 TCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCT 688 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||||| |||| | |||||||||| | || || || || || || || Sbjct 687 TGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTC 628 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || || || || | ||| Sbjct 627 TTACCGGTAAGGGTCTTGACGAAGATTTACAT 596 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || || || || ||||||||||| || || | ||| | ||| Sbjct 579 AGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCCATCT 520 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || |||||| | || | |||||| ||||| || || || || || |||||| Sbjct 519 TCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 460 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | |||||| | || | ||||| || | || || |||||||| || || Sbjct 459 TG-AATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTGATGGT 401 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | ||| || || || |||| ||| Sbjct 400 CTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 >seq6367 Length=732 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | | || ||||| ||||| || ||||||||||| ||||| ||||| | Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | | || || ||| | || | |||||| ||||| || || Sbjct 461 AAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGG 520 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| || || ||| || | || || | || | || ||||| | || || Sbjct 521 ATACCTTCTTTATCCTG-AATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGAC 579 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| ||||| || || || || || || || || |||| |||||| Sbjct 580 ATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385126053997440