Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5287 187 5e-42 seq6367 161 2e-34 seq55 161 2e-34 seq18108 127 4e-24 seq19675 109 1e-18 seq18912 107 4e-18 seq1212 98.7 2e-15 >seq5287 Length=1089 Score = 187 bits (206), Expect = 5e-42 Identities = 183/236 (78%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||||||||| | | || || || || ||||||||||||||||| || || || | Sbjct 416 ACATACCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGT 357 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 ||||||| |||| |||||||||| | |||||||| ||||| ||||| |||||||| | Sbjct 356 CAGATAGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGG 297 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || |||||||||||||| ||||| || || ||||||||||| || ||| || | Sbjct 296 GTGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCT 237 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || || || || || ||||| || || || |||||||| || || | ||| ||| Sbjct 236 CAACATCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACATGATT 181 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | || || ||||| ||||||||||| || || ||||| ||||| | Sbjct 641 TACCTCCTCTGAGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTG 582 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||| ||||| | ||| || || || || || ||||| | |||||| || | Sbjct 581 AGAGGGTTCTACCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTG 522 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| |||||||| || ||||| || |||||||| ||||| || || | Sbjct 521 GGATTCCCTCCTTGTCTTGAATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAA 462 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || |||||||| || | ||||| || || |||| ||| Sbjct 461 CATCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTACAT 413 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | | ||||| ||||| || || ||||| || | || ||||| || || Sbjct 868 ACCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGA 809 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| ||||| || ||||| || || || ||||| ||||||||||| || || || Sbjct 808 AAGAGTTCTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGG 749 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || || | |||||| || || || || ||||| || || ||||| || Sbjct 748 AATACCTTCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAAC 689 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | ||||| || || || ||||| Sbjct 688 GTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 >seq6367 Length=732 Score = 161 bits (178), Expect = 2e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | | || || ||||| ||||| |||||||| || || || |||||||| Sbjct 400 ACCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 459 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| || ||||| | | ||||| |||||||| |||||||||||||| || || Sbjct 460 CAAGGTTCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGG 519 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| |||||||| || || || || || || |||||| || || || Sbjct 520 GATACCTTCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGAC 579 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||| || ||||| || ||||| ||||| || || |||| |||| || Sbjct 580 ATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTTT 631 >seq55 Length=1219 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| ||||| || ||||| || || || || ||||| ||| || |||| |||||| Sbjct 807 AGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCT 748 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || |||||||||||||| || || |||||||||||||| ||||| || |||||||||||| Sbjct 747 TCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCT 688 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || || |||||||| || ||| ||| || || || | || || ||| Sbjct 687 TGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTC 628 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| || || || | ||| Sbjct 627 TTACCGGTAAGGGTCTTGACGAAGATTTACAT 596 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||||||||| | | || || || || ||||| || || || || || || || | Sbjct 371 ACATACCTCCTCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGT 312 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 || || |||| ||||| || ||||| |||||||| || || |||||||||||||| | Sbjct 311 CACTGAGGGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGG 252 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || || ||||| || ||||| ||||| || || ||||||||||| || ||| || | Sbjct 251 GTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCT 192 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || ||||| || | ||||| || || || ||||| Sbjct 191 CAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 140 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| ||||| | | || ||||| || ||||| || || || || || || || | Sbjct 599 ACATACCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGT 540 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 | || |||| || ||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 539 CGCTGAGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGG 480 Query 82699 GAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTT 82758 | || ||||||||||| ||||||||||| || || ||||| || || || || || | Sbjct 479 GTGGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCT 420 Query 82759 CTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || | ||| || ||||| || || | ||||| || || |||| ||| Sbjct 419 CAACGTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | ||||| ||||| || || || || || || || ||||| || || Sbjct 1051 ACCACCTCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGA 992 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| || || || ||||| || ||||| ||||| |||||||||||||| || || Sbjct 991 AAGAGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGG 932 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| || | ||||| || || || |||||||| ||||| || || || Sbjct 931 GATTCCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAAC 872 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || || | ||||| || || || |||||| Sbjct 871 ATCGAGGGTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 >seq18108 Length=1037 Score = 127 bits (140), Expect = 4e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||| | ||| | ||| ||||||||||| | |||||| ||||| || |||| || ||||| Sbjct 388 AACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCAGAGAGGGTTCTGCCATCTTC 329 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 || ||||| ||||||||||| ||||| |||| || | ||||| |||||||| ||||| Sbjct 328 TAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGTCGGCTGGTATGCCTTCCTTGTCTTG 269 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 ||||| || || || |||| || || || | ||| ||| | || || ||||| Sbjct 268 GATCTTGGCCTTGACGGACTCAAAAGTCTCGTTGGCTTCACATTCAAGGGTAATTGTCTT 209 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || ||||||| |||| ||| Sbjct 208 TCCAGTGAGTGTTCTTACAAAAATCTACAT 179 >seq19675 Length=1686 Score = 109 bits (120), Expect = 1e-18 Identities = 183/260 (70%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 143934 ATTCCTATTTAT-ACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGT 143992 ||| ||| || | | ||| ||||||| |||||| |||||| |||| | ||| ||| Sbjct 1359 ATTTCTAATTCTCAAAGACGAAGATGAATGGACTTCTTGGACCAAAAGAGAGGATTTAGT 1300 Query 143993 CTTGCATATAGAACTTAGGAG-ATGGGCTGATGTTTTTATT-ATAGCGCCCTTAACAGCA 144050 | ||||||||||| | ||||| || | || | || |||| || || || ||| ||||| Sbjct 1299 CCTGCATATAGAATTAAGGAGAATAGCCTCA--CTTCTATTGATTGCACCATTATCAGCA 1242 Query 144051 AATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGA 144110 || || ||||| ||| |||| || || | |||||||| || |||| || | | ||| Sbjct 1241 AACACCTTAGCCAAACTAGCAAACGGACTTTGCGATAACTTGCTAATTTCGCTTTTTAGA 1182 Query 144111 GCCTGGGATATAAA------TAAACCTCTTATTTTTTGCCCCGCTATGAATACCCTTATG 144164 |||||||| || ||| ||| ||||| | || ||||||||||| |||| Sbjct 1181 TGTTGGGATATCAAGGGTAGTAAGCCTGTTATTGTAGCACCTGCTATGAATACATATATG 1122 Query 144165 TGGGAACATCCTATTACAGA 144184 | || ||||| || ||||| Sbjct 1121 TTTGAGCATCCAATAACAGA 1102 >seq18912 Length=238 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || || || ||||| ||||| |||||||||||||| || |||||||| || || ||| Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATC 179 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || || || || ||||| | ||| ||| || || || | || || |||||||| Sbjct 178 TTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTGCCG 119 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||||| || || ||||||||| Sbjct 118 GTCAGGGTCTTGACGAAGATCTGCATT 92 >seq1212 Length=3033 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| || | ||||||| || ||||| || |||| ||||||||||| Sbjct 2377 CCTCCTCTTAATCTAAGAACTAGATGAAGAGTGCTCTCCTTCTAGATATTATAATCCTTA 2318 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| || | || || |||| || ||||||||| || || |||||||| | ||| ||||| Sbjct 2317 AGAGTTTTTCCATCATCTAATTATTTTCCAGCGAATATAAGTCTTTGCTAATCAGGAGGG 2258 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 || ||||| |||| | |||| | || | || |||||| || |||| |||| Sbjct 2257 ATGCCTTCAATATCATTAATCATGTTCTTAATATCTTCAATGGTTTCATCAGGT 2204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981577619525760