Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq19675 93.3 8e-14 seq5287 91.5 3e-13 >seq19675 Length=1686 Score = 93.3 bits (102), Expect = 8e-14 Identities = 176/258 (68%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 142953 ATTCCTATTTAT-ACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGT 143011 ||| ||| || | | ||| ||||||| |||||| |||||| |||| | ||| || Sbjct 1359 ATTTCTAATTCTCAAAGACGAAGATGAATGGACTTCTTGGACCAAAAGAGAGGATTTAGT 1300 Query 143012 CTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAA 143071 | ||||||||||| | |||||| || || | | || || || ||| | ||||| Sbjct 1299 CCTGCATATAGAATTAAGGAGAATAGCCTCACTTCTATTGATTGCACCATTATCAGCAAA 1240 Query 143072 TACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGC 143131 || ||||| ||| |||| ||||| | |||||||| || |||| || | | ||| Sbjct 1239 CACCTTAGCCAAACTAGCAAACGGACTTTGCGATAACTTGCTAATTTCGCTTTTTAGATG 1180 Query 143132 CTGGGATATAAA------TAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTG 143185 |||||||| || ||| ||| ||||| | || |||||||||| ||||| Sbjct 1179 TTGGGATATCAAGGGTAGTAAGCCTGTTATTGTAGCACCTGCTATGAATACATATATGTT 1120 Query 143186 GGAACATCCTATTACAGA 143203 || ||||| || ||||| Sbjct 1119 TGAGCATCCAATAACAGA 1102 >seq5287 Length=1089 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAACAA---- 81699 |||||| |||| ||||| || || || |||||||| ||||| | |||||||||| | Sbjct 384 AGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGGGTTCTGCCGTCTTCTAACTACTTT 325 Query 81700 -------AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| ||||| |||||| | || | || ||||||||||||| ||||| || Sbjct 324 CCAGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACCTTCCTTATCTTGGATCTTGGCC 265 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 264 TTGACATTTTCAATAGT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903187154022400