Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18912 114 1e-20 seq55 86.0 6e-12 >seq18912 Length=238 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| | ||| || || ||||| || ||||||||||| |||| Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATC 179 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| | ||| | ||||| ||||||| ||||| ||| |||||| Sbjct 178 TTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTGCCG 119 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 118 GTCAGGGTCTTGACGAAGATCTGCAT 93 >seq55 Length=1219 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || ||||| || ||| | || || | || || ||||| ||||| ||||||||| Sbjct 978 TCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTG 919 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| || || | ||||| || |||| ||| | | Sbjct 918 TCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGGTAATG 859 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || ||||| || ||||| Sbjct 858 GTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483300911641600