Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11890 235 1e-56 seq10042 123 6e-23 seq7211 118 3e-21 seq15602 113 1e-19 seq13344 96.9 8e-15 seq14497 89.7 1e-12 >seq11890 Length=3034 Score = 235 bits (260), Expect = 1e-56 Identities = 590/891 (66%), Gaps = 19/891 (2%) Strand=Plus/Minus Query 110280 TATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTA 110339 |||| ||||| ||||| || || || || | || ||||||||||| || ||| | Sbjct 2257 TATAAACGTGATTATGACTACGATTACTTCGGATATAAGACTCTTGAACGAGCATATCTT 2198 Query 110340 CTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATT 110399 | |||||||| ||||| ||||| | || || || ||| |||| | ||| | | Sbjct 2197 TTGAAAGTCAATGGAAAGATCGTTGAAAGACCCCAGCATATGCTTCTCAGAGTTTCAGTA 2138 Query 110400 GGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAG 110459 ||||| || | ||||||| | |||| ||||| ||| | || | ||| | | | Sbjct 2137 GGTATCCACAAAACTGATATTGATGCTGCAATTGAGACATATAACTTAATGAGTGATA-G 2079 Query 110460 AAAGCT-ATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGC 110518 | | | | |||||| || ||||| || || ||||| || || | | || || Sbjct 2078 ATGGTTCACTCATGCAACCCCTACTCTTTTCAACGCTGGTACCCCAAAACCATAAATGAG 2019 Query 110519 TTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAA 110578 | || || ||| || || || ||||| |||||| | || || |||||| ||||||| Sbjct 2018 TAGCTGTTTCCTTTTAATGATGAAGGATGACTCTATTCACGGAATATATGATACTCTTAA 1959 Query 110579 AGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCG 110638 | |||| | |||||||| | |||| ||| |||| || ||||| |||| | Sbjct 1958 GAACGTTGCTTTGATTTCTAAGAGTGCTGGTGGAGTTGGACTTGCTGTTCACAATATCAG 1899 Query 110639 CTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTT 110698 | | ||| | ||| | | || || |||| |||||||||||| ||| | Sbjct 1898 AGCCACAGGTAGTTACATCAAGGGAACTAATGGACACTCAAATGGACTTGTTCCCATGCT 1839 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTC 110755 ||||| ||||| || ||||| | |||||| | ||||||||| |||||||| || || Sbjct 1838 CAGAGTTTTCAATGAAACTGCTAGATATGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTC 1779 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 ||| |||||||| | || || |||||| | ||| | ||||| ||| | |||| | || Sbjct 1778 ATTCGCTATCTACTTAGAGCCATGGCATGCTGATGTCTTTGACTTCCTTCAACTCAGAAA 1719 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 || || ||| |||||| ||||||| | |||||||| | ||| | ||| || |||| Sbjct 1718 GAACCATGGAAAAGAAGAATAAAGAGCTAGAGATTTATTCTTTGCTCTCTGGGTTCCAGA 1659 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 | | |||||||| | || ||| || || ||| ||||| | ||||| || | Sbjct 1658 TCTTTTCATGAAGAGGGTAAGAGACAACGGTGATTGGACTCTTTTCTGTCCAAATGAAGC 1599 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAA 110995 || || | ||| || | ||| |||||||||||| | | || ||||||||| Sbjct 1598 CAAAGGCCTCTATGAAGTTCACGGAGAAGAGTTTGAAGCCTTATATACTAAATATGAATC 1539 Query 110996 AGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAG-------AACTTTGGTTCAAAATCC 111048 |||| | || | || ||| | | ||||| |||||||| ||| Sbjct 1538 CCAAGGTA---TTGG--AAGAAAGACTA--TCAAGGCAATGAAACTTTGGGAATCAATTA 1486 Query 111049 TTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCA 111108 ||||| || |||| || || ||||| || || | ||||||||||| |||| | | Sbjct 1485 TTGAAAGTTAAATTGAGACAGGTACTCCCTACATGCTTTATAAAGATCACGCTAATGGAA 1426 Query 111109 AATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 |||| || |||| |||| | |||||||| ||| | |||| | || |||| Sbjct 1425 AATCAAACCAAAAGAATCTTGGAACAATAAAGAGTTCTAATCTATGTTGTG 1375 >seq10042 Length=5651 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | | || || |||| ||| | || || || || ||||| || ||||||||| Sbjct 1465 AGACATCTCAGAGATAACGATTATGTTATCTTTAACAGACAGCCATCTCTACATAAAATG 1524 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||||| ||||| ||||||||| || | | || || || | ||| ||||| Sbjct 1525 TCTTTGATGGGTCATAGAGTCAAAGTGCTACCATTCTCTACTTTCAGACTTAATCTAAGT 1584 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 | ||| ||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct 1585 GTAACTACTCCTTACAATGCTGACTTTGATGGTGATGAAATGAATATGCATGTACC 1640 Score = 87.8 bits (96), Expect = 4e-12 Identities = 195/287 (68%), Gaps = 22/287 (8%) Strand=Plus/Plus Query 304879 AAACAATTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCA 304938 || |||| | || || || | ||||| ||||||| || |||||| ||| || Sbjct 1044 AACCAATCTTCAGTACTATGTGGCAACTGTAATGGACAACGAAATTTAAGGA------CA 1097 Query 304939 GGCATCTCAAAG------ATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAG 304991 | || | |||| |||||| | ||| | || | ||||| || | | ||| || Sbjct 1098 GCCAACACAAAAGCATAAATCTGGAAAGCCTCTCAAAGCAATTAGAGCCAGAC-TTAGAG 1156 Query 304992 GTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAA 305051 |||||||||| ||| || |||| ||||||||||| ||| | || |||||| || |||| Sbjct 1157 GTAAAGAGGGACGTCTTAGAGGAAATCTAATGGGTAAAAGAGTCGATTTTTCAGCTAGAA 1216 Query 305052 GTGTAATCACACCTGATTCTCAAATTAGT--CTTCATGAATTAGGAGTTC--CAATTGAA 305107 ||| ||||| || ||| ||||| | || || | | ||||| | |||| | Sbjct 1217 CTGTCATCACTCCAGAT--CCAAATCTCTAACTCGATTAGCTTGGAGTCCCTCAAT--AG 1272 Query 305108 ATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATAT 305154 |||||||| || || ||| |||| |||| ||| | | | ||||||| Sbjct 1273 ATTGCTTTGAACCTGACAGTTCCCGAGACAGTCACCAATGAAAATAT 1319 >seq7211 Length=2975 Score = 118 bits (130), Expect = 3e-21 Identities = 188/265 (71%), Gaps = 10/265 (4%) Strand=Plus/Minus Query 112860 GGAGCTTATGATAGTTTCGAAGGCTCACCTTTTTCACAGGGAAAATTCCAATTTGACCTT 112919 ||| ||||||| | |||| | || || || || || || ||||||||| ||||||||||| Sbjct 1026 GGACCTTATGAGACTTTCTAGGGTTCCCCATTATCCCAAGGAAAATTCTAATTTGACCTT 967 Query 112920 TGGGATCAACAGCCTCTTGACAATGAACCAAAATATGATTGGAAAAATCTTAAAGATAG- 112978 |||||| | |||| || | || | ||| |||||| | || | |||||| Sbjct 966 TGGGATAAGAAGCCA--TGCTCA-GAT---AGATACGATTGGGAGAAATT--AAGATAAG 915 Query 112979 -TGTTATGAAACATGGAACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGA 113037 ||| |||||||| ||| ||| |||||||||||| | || || ||||| || ||||| | Sbjct 914 ATGTGATGAAACACGGAGCTAGAAACTCTCTACTCATTGCCCCTATGCCAACTGCTTCCA 855 Query 113038 CTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCC 113097 | || |||| | || ||||||||| || ||||| || |||| |||| Sbjct 854 CATCATAGATCTTGGGAAATAATGAAACCTTTGAGCCGTACACTTCTAATGTTTACACAA 795 Query 113098 GACGTGTTCTAGCAGGTGAGTTTGT 113122 || | ||||||||||| || ||||| Sbjct 794 GAAGAGTTCTAGCAGGAGAATTTGT 770 >seq15602 Length=1555 Score = 113 bits (124), Expect = 1e-19 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 || ||||| || ||||| | ||||||||| ||| || ||||| | || | ||| Sbjct 850 AAAAAAGCTGATTGGGCACTCAAATGGATTGGAGA-GA--CCGCTCAATTCGCCGAGAGA 906 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 |||||||| || || |||||| || ||||||||||| || | ||||| | || || Sbjct 907 CTTGTAGCCTTCGCAGCTGTTGAGGGCATATTCTTTTCTGGCTCCTTCTGCTCAATTTTC 966 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| ||||||||||| | ||||| || ||| |||| || ||| |||| || || ||| Sbjct 967 TGGCTAAAGAAGCGTGGTCTTATGCCAGGTCTCACATTCTCAAATGAATTGATTTCAAGA 1026 Query 131981 GATGAAGCATTGCATACTGAATTTGC 132006 || |||| |||| || || || || Sbjct 1027 GACGAAGGTATGCACACCGATTTCGC 1052 >seq13344 Length=4935 Score = 96.9 bits (106), Expect = 8e-15 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 279805 AGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC 279864 ||| |||||||||||||| || ||||| ||||||| | ||| | | || || || Sbjct 2761 AGATTTTATTGATAAAGAGCTTATCCACTTTTCTATTGCTGACAATTTAAGATCCATCCC 2702 Query 279865 -TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAA 279923 ||||| ||||||||| | || || || | |||||| |||| | ||||| |||| Sbjct 2701 ATCATT-AATGGATGGACTAAAGCCAGGCTAGAGAAAGATTTTATTTGGCTGTTTTAAAA 2643 Query 279924 GAAAATTGGTAAAG--GAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGC 279981 |||| | ||||| ||||| |||||| ||||| |||| || | ||||| | | Sbjct 2642 GAAAGCT--TAAAGCTGAAATCAAGGTTGCTTAGTTATCAGGCTACATAGCAGAATAAAC 2585 Query 279982 AGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTT 280041 | |||||||| |||||| | |||| || |||||||| | | ||| | || || Sbjct 2584 TGCCTATCATCATGGTGAAATGAGTCTTTAAATGACTATTGTAAATATGGCCTAGGACTT 2525 Query 280042 TATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGG 280089 | | | | || || |||||||| | |||| |||| ||||||| Sbjct 2524 TGTAGGTAGTAATAATTTAAATCTCTTAATGCCAATTGGTTAATTTGG 2477 >seq14497 Length=10371 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 305282 CTTGAAATTAATGATATTGTTATCAGACATTTG---AATGACAATGATTGGGTTCTGTTC 305338 ||| ||||| |||||||| |||||| || |||| | ||| | || || || Sbjct 5425 CTTCAAATTGGAGATATTGTCGAAAGACATCTGGAAAATGGCGATGTT---GTGCTTTTT 5481 Query 305339 AATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCT 305398 ||||| ||||| || || | | | || || ||||||||||| | | |||| | | Sbjct 5482 AATAGACAACCCAGTCTTCACAGAGTCTCAATTATGGCTCATAAGGCTAGAGTAATGCCC 5541 Query 305399 GGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGA 305458 | || || |||| |||| ||| || || ||||||||||| ||||||||||| Sbjct 5542 TCAAGAACTTTAAGATTCAATGAGTGTGTATGCACACCTTATAATGCAGATTTTGATGGT 5601 Query 305459 GATGAAATGAATATGCATGTACCTCAATC 305487 ||||| |||||||| ||| ||||| |||| Sbjct 5602 GATGAGATGAATATTCATTTACCTTAATC 5630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186511112186240