Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6367 131 4e-25 seq55 98.7 2e-15 seq18108 95.1 3e-14 seq5287 93.3 1e-13 >seq6367 Length=732 Score = 131 bits (144), Expect = 4e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 630 AAAATGTA---GATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAG 574 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| || |||| || ||| |||||||| || |||||||| || || Sbjct 573 CCCTCTGATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCT 514 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || |||||||| ||||| ||||||||| |||||||||||||||| || ||| | ||| Sbjct 513 GATCAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGAT 454 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| |||| ||||| || ||||||||| | || ||||||||| || Sbjct 453 TACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGA 406 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||||||| || | ||||||||| || ||||| |||| || || |||| ||| || Sbjct 406 TCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGT 465 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||| || ||||||||| ||||| || | ||||||| Sbjct 466 TCTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGA 511 >seq55 Length=1219 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || |||||| | || || || || ||||| |||| Sbjct 382 CAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGAGCCATCAGACACCATCGAGAA 441 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| || |||||||| || || |||||||||||||| Sbjct 442 TGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGACTTATCTT 501 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| | |||||||| || || | ||| |||||| | || || ||||| Sbjct 502 TGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAACATTCAAAAGGAGTC 561 Query 206364 TACTCTTCA 206372 ||||| || Sbjct 562 AACTCTCCA 570 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||| | ||| | |||||| || ||||| || |||| |||||||| | | ||| ||| Sbjct 1041 AGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTT 982 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||| || || ||||| || ||||||||||| | ||||||| Sbjct 981 CCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGA 940 >seq18108 Length=1037 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 206174 AGATATTTTGCAA-AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||| ||||| || ||| ||||| ||||| || || || | ||| ||| || Sbjct 183 AGAT-TTTTGTAAGAACACTCACTGGAAAGACAATTACCCTTGAATGTGAAGCCAACGAG 241 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||| ||||| ||||| || ||||| || | ||| || Sbjct 242 ACTTTTGAGTCCGTCAAGGCCAAGATCCAAGACAAGGAAGGCATACCAGCCGACTAACAG 301 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| || || || ||||| |||||||| || || | | || || || ||| Sbjct 302 AGACTTATCTTTGCTGGCAAACAGTTAGAAGATGGCAGAACCCTCTCTGACTATAATGTC 361 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 |||||||| || ||| ||||||| ||||| |||||| Sbjct 362 CAGAAAGAATCAACTATTCACCTCGTTTTAAGACTT 397 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 |||||| ||||| ||||||| ||| || |||||||||||||||||||||| | || || Sbjct 397 AAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCAGAGAGGGTTCT 338 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTT 204854 |||||||| | ||| || || || |||||||| | |||| Sbjct 337 GCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTT 297 >seq5287 Length=1089 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || || || || || || || |||||||| | ||| || ||| Sbjct 209 ACTGGAAAGACTATTACCTTAGATGTTGAGCCATCTGACACTATTGAAAATGTCAAGGCC 268 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || || || |||||||||||||| |||||| Sbjct 269 AAGATCCAAGATAAGGAAGGTATCCCACCCGATCAACAGAGACTTATCTTCGCTGGAAAG 328 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||| ||||| || || || | | || |||||| |||||||||| |||||||| || Sbjct 329 TAGTTAGAAGACGGCAGAACCCTATCTGACTACAACATCCAGAAAGAATCTACTCTCCA 387 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| | || || ||| || ||||| | || Sbjct 655 CAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCAGACACTATTGAGAA 714 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||| | || |||||||| ||| || ||| |||||||||||||| Sbjct 715 CGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAACAAAGACTTATCTT 774 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| | || || ||||| ||| | | || || ||| || | || || || Sbjct 775 CGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAACATCTAAAAGGAATC 834 Query 206364 TACTCTTCACCTTGTTTTGAGACT 206387 || |||||| | ||| | ||||| Sbjct 835 CACCCTTCACTTGGTTCTAAGACT 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181520381152640