Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5287 109 5e-19 seq18108 98.7 9e-16 seq55 96.9 3e-15 seq6367 95.1 1e-14 >seq5287 Length=1089 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACA 25257 ||||| || | ||||| | || || || |||| | ||||| || || | || ||| Sbjct 437 ACCGGCAAGACCATCACTCTTGATGTTGA-GCCATCCGATACCATTGAAAACGTGAAAGC 495 Query 25258 AAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAA 25317 |||||| || || ||||| || || |||||||| | |||||||||| || ||| || Sbjct 496 TAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAATAGAGACTCATTTTCGCCGGTAA 555 Query 25318 ACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCA 25377 ||| | ||||||| ||||| || ||||||||||||||||| ||||| || | || Sbjct 556 GCAATTGGAAGATGGTAGAACCCTCTCAGATTACAATATTCAAAAGGAATCTACTCTCCA 615 Query 25378 TTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||| | |||||||| Sbjct 616 CTTGGTCCTAAGACTCAGAGGAGG 639 >seq18108 Length=1037 Score = 98.7 bits (108), Expect = 9e-16 Identities = 170/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| | ||| |||||||| || | ||||| | | || || |||| | Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGA-GCCATC 693 Query 25235 -GATACTATCGAGCAAGTAA-AACAA-AAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 |||| || || ||| | || || |||||| || ||||| ||||| || ||||| Sbjct 694 AGATAACATTGA--AAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGAT 751 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTA 25350 || ||||| || | | |||||||| || || || | ||||| || | | || || Sbjct 752 TCACAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAAC-GTTATCTGACTA 810 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGA 25408 || || |||||||||| || ||||||||||| | ||| ||||||||||||| ||| Sbjct 811 TAACATCTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGAGGAGGAAACTGA 868 >seq55 Length=1219 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||| || | || || || || | ||||| || | ||||| |||| ||||| ||| | Sbjct 596 ATGTAAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGA-GCCTTC 654 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || || ||||| || ||||| || |||||||| Sbjct 655 TGACACTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCA 714 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| || || |||||||||||||| | |||| | || || || || Sbjct 715 ACAAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAA 774 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||| || || ||| | || || || | ||| | ||||| |||| Sbjct 775 CATCCAAAAGGAGTCTACCCTCCACTTGGTTCTCAGACTTAGAGGTGGAA 824 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||| ||||| || |||||||| ||||||||||||| || || || |||||||| Sbjct 233 GACAAAGAAGGTATCCCACCCGATCAACAAAGACTCATTTTCGCTGGAAAGCAACTCGAG 292 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || | |||| |||| || ||||| || ||||| || || || | ||||| || | Sbjct 293 GACGGCAGAACCCTCAGTGACTACAACATCCAAAAGGAGTCAACTCTCCATTTGGTCCTC 352 Query 25388 AGATTGAGAGGAGG 25401 ||| | |||||||| Sbjct 353 AGACTCAGAGGAGG 366 >seq6367 Length=732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || || || || || | || || | || ||||| || ||||| ||| Sbjct 618 TTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCCTCTGATACCATC 559 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 ||| | || || || ||| |||||||| ||||| || || ||||| ||||||||| Sbjct 558 GAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGATCAACAAAGACTC 499 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | ||| || | | ||||||| |||| |||| | ||||||| || |||| Sbjct 498 ATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTG--ATTACAACATCCAAA 441 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || |||| || || || ||| | |||||||| Sbjct 440 AAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGG 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444984016588800