Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7211 282 6e-71 seq11890 262 5e-65 seq15602 239 6e-58 >seq7211 Length=2975 Score = 282 bits (312), Expect = 6e-71 Identities = 759/1141 (67%), Gaps = 30/1141 (3%) Strand=Plus/Plus Query 69091 GCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA 69150 |||||||| ||||| ||||| ||||||||||| ||||||||||| ||||||| || | Sbjct 1145 GCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATATTTA 1204 Query 69151 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT-TCGGACTACTAC 69209 ||||| || |||||||| | ||| |||| ||||| || || ||||| | || | | | Sbjct 1205 GCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGG--TGATTC 1262 Query 69210 T-TTAACCACGTCCTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTA-TAACAAACA 69262 | || || | | || || | | ||| | | ||| | || ||||||| Sbjct 1263 TCTTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAATC 1322 Query 69263 TATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTA 69322 |||| ||||||| ||| || || ||||| || || | || | | | | | | | || Sbjct 1323 TATTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTA 1382 Query 69323 TTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTT 69382 || || ||||| ||||| |||| ||| || |||||||| |||||| ||| Sbjct 1383 CGATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTC 1442 Query 69383 TGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAA 69442 ||||||| | || ||||| || ||| | || || |||||||||| | ||||| | || Sbjct 1443 TGTTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAA 1502 Query 69443 TAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTT--TTTCATA 69500 | | |||| | ||||| || || || || | | | || |||| || Sbjct 1503 TCTAGGTCCATAGCCATCTAGCCTTGAT--CGTCTTTCTTCCTCGTCCGGAAATTTCGTA 1560 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCC-AATCCAGGACATTCAT 69559 | ||| || || ||||| ||||||||| ||| | ||||| || ||||| | Sbjct 1561 CTCCTCATAAAGTTTATCAAATTCCTCTCCCCAA-CATGTTGTTAATCCTGGGCATTCGT 1619 Query 69560 TTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAA 69619 | ||||||||||||| ||| | |||| | || ||| | | |||| |||| || |||| Sbjct 1620 TGGGACACATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGAA 1679 Query 69620 TCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttA 69678 |||| ||||| ||| || |||||||| | ||| || ||||| || || ||| ||| | Sbjct 1680 TCCAGAGAGC-ATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCTG 1738 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 || | || || || |||||| | |||||||||||| | ||| | || | | || Sbjct 1739 AGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACCT 1798 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 || ||| ||||| ||||| | || || ||||||| |||| | || | ||||| Sbjct 1799 TTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCATA 1858 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA 69858 || || | ||||| || | || |||||||| ||| ||| | ||| | || Sbjct 1859 GGTATCAATCCATTTGAGTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGATG 1918 Query 69859 TTACTAATA--GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCA 69916 | || | | || | ||| || ||||| || || ||||| | || | | | Sbjct 1919 T--CTGACACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCTTA 1976 Query 69917 ATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAA--AACAGCTAG 69973 || ||| | ||||| || || ||| ||| |||| ||||| ||||| || | || Sbjct 1977 GAGTCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT-- 2034 Query 69974 ACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033 ||||| | | | | |||||| | |||||| | ||| || | |||||||||||||| Sbjct 2035 -CATTTAAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAACCAAA 2093 Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTA 70093 | | | | || |||||||||| ||||||||||| |||| || |||||||| | Sbjct 2094 GCTGACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTGTGAATTCCAA 2153 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT-TTTCAAC 70152 | ||| | ||||| ||| || || |||| || | |||| || || ||| || Sbjct 2154 TACTGACTCTCATCAGCATGTGTTGTGGTCTCTCAATTATTTT-GGATCCATCTTTTAAA 2212 Query 70153 AGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAA 70212 || || | | | ||||| ||| | || |||||||| | ||| ||||||| |||||| Sbjct 2213 AGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCTCTGTCGTAA 2272 Query 70213 A 70213 | Sbjct 2273 A 2273 >seq11890 Length=3034 Score = 262 bits (290), Expect = 5e-65 Identities = 1002/1554 (64%), Gaps = 33/1554 (2%) Strand=Plus/Plus Query 68658 GATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTAT 68717 || |||||||||||| || || | | | | | |||||| | ||| ||||| || Sbjct 701 GACCTCATCATTCCATAAGTTAATATTGATGAGATCTCTAACCAAATGAGGATTGACGCA 760 Query 68718 TTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 68777 ||||| || | | ||||| | || || || || | || ||||| || | | Sbjct 761 CACGAATTCACCGGCAAGTACTCTTCTGGTATAGATGTTTGTTGTGTATGGCTCGAAACT 820 Query 68778 TTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACT 68837 ||| ||||| || | ||||| | |||||| |||||||||||||| || ||||| | Sbjct 821 TTCGTTATTACCTAAGATTTGGGAAGTTGAAGCAGTTGGCATAGGAGCAACCAAAAGTGA 880 Query 68838 ATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGA 68897 |||||| ||| | |||| | | || | | | | |||||| | || | Sbjct 881 ATTTCTTGCACCGAACTTGATGACATCAGCTCTCAATTTATCCCAATCGTATCTATTTGT 940 Query 68898 TGGTACAA---CATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATT 68954 ||| | ||||||||||||| ||||| | | || | |||| ||||| Sbjct 941 TGGAAGTTTTTCATTCCAAAGATCATATTGGAATAGACCCTGACTTAATGGAGATCCTGG 1000 Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTA---ATGCACC 69011 | | || ||||| || || || || ||||| ||||| || | ||||| Sbjct 1001 GAAAGATTGATAAGCCCCCTCTACTTTGGCAAGTTCCATACTTGATTCCATAGATGCA-- 1058 Query 69012 GTAATAAATTGTTTCGAAAATCTTCTT-ATTGAGATCTTGTGCT-TCTAGACTATCGAAT 69069 | |||||||||||| ||||| ||||| ||||| | | ||| ||| || || ||| Sbjct 1059 -TGATAAATTGTTTCAAAAAT-TTCTTGATTGAACTGATAGGCTCTCTCATCT-TCAAAT 1115 Query 69070 GGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTA 69129 ||| | | ||| |||| ||||| || | ||||| ||| || |||||||| |||||| Sbjct 1116 GGAATTTTGAGAAGCATAAGGGCATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTA 1175 Query 69130 TGTCTCTTATTTGAACTTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTT 69188 |||||| ||||||| ||| || || | | | |||||| ||||| ||| || ||| | Sbjct 1176 TGTCTCATATTTGAGTTTTTGGCCTCATCGCA-AGGATAGTAATTGCCATCAATGATTCT 1234 Query 69189 ATTAAGATT-TCGGACTACTACTTTAACCACGTCCTTTA----GTTTGAGAAAATCAAAT 69243 |||||||| | || || ||| | | ||||| |||| | ||||||| Sbjct 1235 GTTAAGATTCTTGG-----TAACTTAGAAAGTTACTTTATGAAGTTTCTCATAATCAAAG 1289 Query 69244 CGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA 69303 ||||| | | | | || |||| || || || ||||| || || || | ||| Sbjct 1290 ACTCCATTTGTTATGTATCTAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCA 1349 Query 69304 TTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGA 69363 | | | | ||||| || ||||| |||||||||| || || || || || ||| Sbjct 1350 TCTGGAGAAGTATATTCAATGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGA 1409 Query 69364 TTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTT 69423 || | || || ||| ||| | || || ||||| || | |||||||| || Sbjct 1410 TTCTTTTGGTTTGATTTTCCATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTC 1469 Query 69424 TCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTA-CGGTCTTGTA 69482 ||||| | | ||| ||||| |||| ||||| | | || || || | |||| | Sbjct 1470 TCAATTTAACTTTCAATAATTGATTCCCAAAGTTTCATTGCCTTGATAGTCTTTCTTCCA 1529 Query 69483 ACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATC 69542 | | | | |||||||| ||||||| ||| || || ||||| ||| |||| Sbjct 1530 ATACCT-TGGGATTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATA 1588 Query 69543 CAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTT 69602 | || |||||||||||| | | | ||| || | | || | || | || Sbjct 1589 GAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTT 1648 Query 69603 CATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATT 69662 ||| || ||||| |||| ||| ||||| | || | |||||| | ||| | |||||| || Sbjct 1649 CATGAAAAGATCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTT 1708 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 ||| || ||| | || | || || || | | ||||| ||||||||| |||| || Sbjct 1709 TCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTA 1768 Query 69723 TATCGCCA-TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTAT 69781 || || | ||| ||| || || || || || || | ||||| ||||| | || Sbjct 1769 GATAGCGAATGAA-CCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCAT 1827 Query 69782 TATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAAC 69841 | | ||||| ||||| |||| || ||||| || | ||||| ||||| || |||| Sbjct 1828 TGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAAC 1887 Query 69842 TTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901 | ||| | || | ||||| || || || || | ||| || || | ||||| || | Sbjct 1888 TACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCA 1947 Query 69902 GAGCACAACGTT--TCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAG 69959 |||| ||||| | | || |||||||| || | || ||||| |||| | | Sbjct 1948 AAGCA--ACGTTCTTAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAA 2005 Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019 ||| ||||||||| ||||| | | | || || || || || | ||||| | ||| Sbjct 2006 AAGGAAACAGCTACTCATTTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGC 2065 Query 70020 GTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCA 70079 |||||||||||| | ||| | | || ||||| ||||| || | || ||||| Sbjct 2066 ATGAGTGAACCATCTATCACTCATTAAGTTATATGTCTCAATTGCAGCATCAATATCAGT 2125 Query 70080 CTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATT 70139 | || || |||| | || | | | ||||||||| |||| ||| || | || Sbjct 2126 TTTGTGGATACCTACTGAAACTCTGAGAAGCATATGCTGGGGTCTTTCAACGATCTTTCC 2185 Query 70140 ATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 ||| | |||||| || |||| | ||| ||||| ||| | || || || | ||| Sbjct 2186 ATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTTATATCCGAAGTAATCGTA 2239 >seq15602 Length=1555 Score = 239 bits (264), Expect = 6e-58 Identities = 403/578 (70%), Gaps = 8/578 (1%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || ||||| ||| ||||| || || |||||||| || ||||| ||||||||||| Sbjct 1034 CCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACCACGCTTC 975 Query 39698 TTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 || ||||| || || | |||| ||| | ||||||||||| ||||| || || ||||| || Sbjct 974 TTTAGCCAGAAAATTG-AGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGCTGCGAA 916 Query 39757 TGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATC 39813 || ||||||||||| || | ||| | | | | | ||||| || |||||||||| Sbjct 915 GGCTACAAGTCTCTCGGCGAA--TTG-AGCGGTCTCTCCAATCCATTTGAGTGCCCAATC 859 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 |||||| || ||| || || | | | ||| || |||||| | | |||||| | Sbjct 858 AGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGAAGAGAAATTCTTTTTCTTG 799 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 || ||| | || || || | ||| ||| |||| |||||||| || || Sbjct 798 TGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTTCACTGTGGATGTTCTCCAT 739 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 | |||||| ||||| || |||||||| || |||| | || | || | || ||||| Sbjct 738 CATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTTAGATTTCAGTGCAGAATCT 679 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 | |||||||||||||| ||||| || ||| ||| ||||| || || | ||||| || Sbjct 678 CTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAAAGAAGGCTAGAACATGCTT 619 Query 40054 AATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATC 40113 |||||| | | | || | | | | | | | ||| || || ||||| | | || ||| Sbjct 618 AATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCCTTAATATCAGTAGCTAGATC 559 Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 | |||||| | ||||| || | ||| | | ||||||||| ||||| |||||| Sbjct 558 AATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTGTACATTTTCCAGATATCATT 499 Query 40174 ATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 |||| || || | ||||||||||| |||||||||| Sbjct 498 GTATTTGATAGGTAGGATAACAAATCTGTTTGGATTTT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686738446617600