Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10217 114 1e-20 >seq10217 Length=2370 Score = 114 bits (126), Expect = 1e-20 Identities = 219/322 (68%), Gaps = 3/322 (1%) Strand=Plus/Minus Query 40852 AAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAG 40911 |||| || || ||| | || ||||| || || ||||| ||| | | | ||||||| |||| Sbjct 1259 AAGAAAGAGAGGAATGGGACCTTGGGCCAGTCTATGGCTTTTAATGGAGACATTTCGGAG 1200 Query 40912 CAAAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCG 40971 | ||| ||||||||| | ||||||||||| ||| ||||| | |||||| || || Sbjct 1199 CTGCATACGACACTATGCATTCTGATTATACTAATTAAGGATTCGATCAACTAGCTGACG 1140 Query 40972 TTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACC 41031 | || || ||||| | |||| |||| || | || | || |||| ||||| Sbjct 1139 TAATCAATTAAATTAAGAACAATCCAACTAGCAGAAGAATCCTGATGAGCGCCTGGAATG 1080 Query 41032 CAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT 41091 || | || || | ||||| | || ||||||||| | ||| | | || |||||| Sbjct 1079 CAGCAGATTTAAAGAAAATGGCTCTTCCTCCTTGTCATATATTAGCTTAATTCTACGTTA 1020 Query 41092 GCAATG---GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGG 41148 | || |||| || || || ||||| |||||||| |||| ||||| || || | Sbjct 1019 CCGCTGACTAAAAACTATCCTGCCAGATGTATTAAAGATCATGTGATATGGGTCTTGGTG 960 Query 41149 TCCCGTTTAACATAGCGAGTTA 41170 | || || || || || || || Sbjct 959 TTCCTTTCAATATTGCTAGCTA 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397359895139200