Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq55 109 5e-19 seq7211 105 6e-18 seq5287 87.8 2e-12 >seq55 Length=1219 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || ||||| || |||||||| || | | | | |||| ||| Sbjct 348 ACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCGTCCTCG 289 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || ||| ||||||| | |||||||| || || | ||| ||||| || | Sbjct 288 AGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 229 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | ||||| | || ||||| || | || |||| |||| Sbjct 228 ATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTG 169 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || |||||||||||| Sbjct 168 CCAGTAAGGGTCTTAACGAAGATTTGCATA 139 >seq7211 Length=2975 Score = 105 bits (116), Expect = 6e-18 Identities = 262/389 (67%), Gaps = 9/389 (2%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 || |||||| |||||||||| | | ||| | | |||| ||||| | |||| || Sbjct 1610 GGGCATTCGTTGGGACACATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAAT 1669 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 || || || | ||| | || || ||||||||||| ||| | ||||||||| || |||| Sbjct 1670 AAGTCTGGAATCCAGAGAGCATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTA-CCATG 1728 Query 131723 AtttttttCAAATTTAA-AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 ||| ||| | || || ||||| |||| || |||||||| ||||| | ||| ||||| Sbjct 1729 ATTCTTTCTGAGTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGC 1788 Query 131782 CATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | || ||||| | || ||| ||||||| ||||| | | ||| || | || Sbjct 1789 AAAAGCACCTTTTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAAC 1848 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 | ||| || ||| || || | || ||| || || | ||||||| | || Sbjct 1849 CTTTAGCATAGGTATCAATCCATTTGAGTATCCGTTTGTTCCTCTAATGTAAGAGTCAGC 1908 Query 131899 GGCTCTGATTTTGTGA-ACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCG 131956 || |||| | | ||| || || ||||||||||| || | ||| ||||| | |||| Sbjct 1909 TGCCCTGA-TGTCTGACACTGAGACACCAATACCTCCAGCAGCCTTT-GAGATAACTGCG 1966 Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTC 131985 || ||||||| | | ||||||| || Sbjct 1967 ATTTATCTTAGAGTCTCAAAGATACCGTC 1995 >seq5287 Length=1089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||||||||| || | | | | | ||||| Sbjct 621 ACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAGAGGGTTCTACCATCTTCC 562 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || ||||||||| ||||||| | || |||||| || || | ||||| || || Sbjct 561 AATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGGATTCCCTCCTTGTCTTGA 502 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||||| | |||| | || || | |||| ||||| || ||||| || | || Sbjct 501 ATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGC-TCAACATCAAGAGTGATGGTCTT 443 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || || || || ||||| | |||| || || Sbjct 442 GCCGGTAAGGGTCTTAACGAAGATCTACATACCTCCT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424831650862080