Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11890 181 1e-40 seq15602 104 3e-17 >seq11890 Length=3034 Score = 181 bits (200), Expect = 1e-40 Identities = 620/956 (65%), Gaps = 33/956 (3%) Strand=Plus/Plus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || || || | |||||| | ||| || ||||| |||| |||||| || ||| | Sbjct 1138 CATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTATGTCTCATATTTGAGTTTTTGG 1197 Query 111111 CAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 | |||| || ||||| |||| | ||||||| || ||| ||||| |||||||| Sbjct 1198 C---CTCATCGCAAGGATAGTAATTGCCATCAATGATTCTGTTAAGATTCTTGGTAACTT 1254 Query 111168 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACT 111227 || | || ||||||||| ||||||||||| || || || || | || Sbjct 1255 AGAAAGTTACTTTATGAAGTTTCTCATAATCAAA-----GACTCCATTTGTT-ATGTATC 1308 Query 111228 TTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTA 111287 | || || | ||||| || | |||||| ||||| | ||||| | || || || | Sbjct 1309 TAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCTGGAGAAGTATATTCAA 1368 Query 111288 AAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG-TTACTCTTC 111346 || || ||||| || |||||||| || || || | |||||||||| || | ||| Sbjct 1369 TGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCTTTTGGTTTGATTTTC 1428 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 | || | ||| || || ||||||||||| || || ||||| | | || | | Sbjct 1429 CATTAGCGTG-ATCTTTATAAAGCATGTAGGGAGTACCTGTCTCAATTTAACTTTCAATA 1487 Query 111407 ATAGCCTTCCAAA----CATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCT 111461 || | | ||||| ||| | | || || | | | || | || | | | Sbjct 1488 ATTGATTCCCAAAGTTTCATTGCC--TTGATAGTCTTTCTT---CCAATACCTTGGGATT 1542 Query 111462 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 111521 | || || || || | |||||||||||| || || | || |||| ||| || | Sbjct 1543 CATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTGGCTT 1602 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 | |||||||||||||| ||| | ||| || |||| |||||||||||| |||| Sbjct 1603 CATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATCTG 1662 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 ||| ||| || | | || | ||||||| | ||||| | || ||||| || Sbjct 1663 GAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTTC 1722 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | |||||| || | || ||| || ||||||||||| | |||| |||| || | Sbjct 1723 TGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAAC 1782 Query 111702 CCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||||| | ||| |||| | ||||| | || || | || || || | |||| Sbjct 1783 CCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGCA 1842 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT---ACGAGATTTATTGGCTC 111815 | |||| || |||| ||| || ||||| || ||| || || | | |||||| Sbjct 1843 TGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCT---GTGGCTC 1899 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | || || | | |||| || ||||| | ||| || || ||| | | Sbjct 1900 TGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCAAAGCAACGTTCT 1959 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 ||||||| |||| || |||| || ||||| ||||| | | |||||| || || Sbjct 1960 TAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAAAAGGAAACAGCTAC 2019 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 ||| | ||| |||| |||||||| ||||| || || || ||||| ||| ||||| Sbjct 2020 TCATTTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAAC 2075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 || || ||||| || || |||||| |||||||||||||||||||| || || | | Sbjct 762 ACGAATTCACCGGCAAGTACTCTTCTGGTATAGATGTTTGTTGTGTATGGCTCGAAACTT 821 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 || |||||||| |||||||| | || || || |||||||| || || | |||||| Sbjct 822 TCGTTATTACCTAAGATTTGGGAAGTTGAAGCAGTTGGCATAGGAGCAACCAAAAG 877 >seq15602 Length=1555 Score = 104 bits (114), Expect = 3e-17 Identities = 162/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | ||| || |||| ||||| | |||||||||||| ||||||||||| ||||| Sbjct 1041 GTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACC 982 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| |||| | |||||| || || || ||||| || ||||| ||| Sbjct 981 ACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGC 922 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCATTTCATTG 122848 || || || | ||| | |||||||| ||||| | || | ||| |||||| | || Sbjct 921 TGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCG-GTCT---CTCCAATCCATTTGAGTG 866 Query 122849 CCCATTTCGCCTTCTTCTC-AATACATGGTACAGTTTGGATGGCTT 122893 |||| | || || || | | ||| ||||| | | |||| |||| Sbjct 865 CCCAATCAGCTTTTTTAGCTACTAC-TGGTATATTGTGGACAGCTT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627876248064000