Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11890 107 2e-18 seq15602 96.9 4e-15 >seq11890 Length=3034 Score = 107 bits (118), Expect = 2e-18 Identities = 606/958 (63%), Gaps = 37/958 (4%) Strand=Plus/Plus Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584 |||| || || || | ||||||| || ||||| | |||||||||||| || || | Sbjct 1138 CATCAGCTAGTCCCTAAACACCGATACCGATTGGTCTATGTCTCATATTTGAGTTTTTGG 1197 Query 118585 CGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641 | ||| || ||||| |||| | ||| || | || || ||||| ||||| || Sbjct 1198 C---CTCATCGCAAGGATAGTAATTGCCATCAATGATTCTGTTAAGATTCTTGGTAACTT 1254 Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 118701 || | || |||||| || || |||||||| || || || || | || Sbjct 1255 AGAAAGTTACTTTATGAAGTTTCTCATAATCAAA-----GACTCCATTTGTT-ATGTATC 1308 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761 |||| || | ||||| || ||||| ||||||| | ||||| | ||| || || | Sbjct 1309 TAGGGAGTGATATTGAGGCAAGATTGCACACAGCAATTTCATCTGGAGAAGTATATTCAA 1368 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 | || || || | || |||||||| || || || | |||||||| ||||| ||| Sbjct 1369 TGATCTCACAACATAGATTAGAACTCTTTATTGTTCCAAGATTCTTTTGGTTTGATTTTC 1428 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT--GAG 118879 ||| ||| || ||||||||||| || || || ||||| ||| |||| | Sbjct 1429 CATTAGCGTGATCTTTATAAAGCATGTAGGGAGTACCTGTCTCAATTT--AACTTTCAAT 1486 Query 118880 AATAGCCTTCCAGA----CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC----CCCTCT 118931 ||| | | ||| | ||| | | || | ||| | || || | || | Sbjct 1487 AATTGATTCCCAAAGTTTCATTGCC--TTG--ATAGT--CTTT--CTTCCAATACCTTGG 1538 Query 118932 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 118991 || || || || || | ||||||||||||||| || | || |||| ||| Sbjct 1539 GATTCATATTTAGTATATAAGGCTTCAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTG 1598 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 119051 || | || ||| ||||| |||| ||| | ||| || |||| ||||||||| || Sbjct 1599 GCTTCATTTGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGA 1658 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 ||||| | |||||| || |||| | ||| | | | |||||| | || || || Sbjct 1659 TCTGGAACCCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTC 1718 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 | | | | ||||| | || ||| || ||||| || || | ||| | |||| | Sbjct 1719 TTTCTGAGTTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAAT 1778 Query 119172 GACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGA 119228 || ||||| | | |||| | |||| ||||| || ||||| | || || || | Sbjct 1779 GAACCCTTTCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTG 1838 Query 119229 AGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGA-GACTTATTGGC 119287 ||||| |||| | |||| || || ||||| || ||| || | || | |||| Sbjct 1839 AGCATGGGAACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCT-GTGGC 1897 Query 119288 TCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 119347 ||||| || ||| | | |||| || || || | ||| || || || | Sbjct 1898 TCTGATATTGTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAATCAAAGCAACGTT 1957 Query 119348 CGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCT 119407 | | ||| | | || || || | || |||||| |||| | | ||||| ||||| Sbjct 1958 CTTAAGAGTATCATATATTCCGTGAATAGAGTCATCCTTCATCATTAAAAGGAAACAGCT 2017 Query 119408 CGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 ||||| || | || |||||||||||||| ||||| || || || || ||||| Sbjct 2018 ACTCATTTATGGTTTTGGGGTACCAGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAAC 2075 >seq15602 Length=1555 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||| ||||| | || || | |||||| ||||| ||||||||||| ||||| Sbjct 1041 GTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACC 982 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | ||||||||| | || || |||||||| ||||| || ||||| ||| Sbjct 981 ACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGC 922 Query 130147 CGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGG 130180 ||||| || | || | ||| || || |||||| Sbjct 921 TGCGAAGGCTACAAGTCTCTCGGCGAATTGAGCGG 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618281828070400