Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11890 179 4e-40 seq7211 165 9e-36 seq15602 98.7 1e-15 >seq11890 Length=3034 Score = 179 bits (198), Expect = 4e-40 Identities = 619/957 (65%), Gaps = 35/957 (4%) Strand=Plus/Minus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||| ||||| || || || ||||| |||||||| |||| ||| ||||| || Sbjct 2075 GTTCACTCATGCAACCCCTACTCTTTTCAACGCTGGTACCCCAAAACCATAAATGAGTAG 2016 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 || |||||| | | ||||| ||||| || |||| || |||| ||||||| | | Sbjct 2015 CTGTTTCCTTTTAATGATGAAGGATGACTCTATTCACGGAATATATGATACTCTTAAGAA 1956 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC 104493 ||| || || ||| | ||||| || |||| | | || || | ||||| Sbjct 1955 CGTTGCTTTGATTTCTAAGAGTGCTGGTGGAGTTGGACTTGCTGTTCACAATATCAGAGC 1896 Query 104494 CAATAAATCTCGT---ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 104550 || | | || || ||| || ||||| || ||| |||| || |||| ||||| Sbjct 1895 CAC---AGGTAGTTACATCAAGGGAACTAATGGACACTCAAATGGACTTGTTCCCATGCT 1839 Query 104551 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATC 104607 | || || || | || || | ||||| | |||| ||| | ||||||| || Sbjct 1838 CAGAGTTTTCAATGAAACTGCTAGATATGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTC 1779 Query 104608 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 104667 |||| |||| | ||||||||||| || ||| || | || |||||| | | | Sbjct 1778 ATTCGCTATCTACTTAGAGCCATGGCATGCTGATGTCTTTGACTTCCTTCAACTCAGAAA 1719 Query 104668 CAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 104727 ||||| || | || || | | ||| | |||| ||||||||| ||||||| Sbjct 1718 GAACCATGGAAAAGAAGAATAAAGAGCTAGAGATTTATTCTTTGCTCTCTGGGTTCCAGA 1659 Query 104728 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 104787 ||| ||||||||||| || || | || ||||| |||| || |||||| | | || Sbjct 1658 TCTTTTCATGAAGAGGGTAAGAGACAACGGTGATTGGACTCTTTTCTGTCCAAATGAAGC 1599 Query 104788 ACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGA 104847 || |||| || | || || |||||||||||| | || || || || || Sbjct 1598 CAAAGGCCTCTATGAAGTTCACGGAGAAGAGTTTGAAGCCTTATATACTAAATATGAATC 1539 Query 104848 AGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG----TGTGGAAAGCTATTCTCA 104903 ||||| | | ||| | || | | ||| | ||| || | ||| | Sbjct 1538 CCAAGGTATTGGAAGAAAGACTAT--CAA--GGCAATGAAACTTTGGGAATCAATTATTG 1483 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 | | ||| ||||| ||||| || ||||||||||| ||||| | ||| ||| Sbjct 1482 AAAGTTAAATTGAGACAGGTACTCCCTACATGCTTTATAAAGATCACGCTAATGGAAAAT 1423 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 || ||||||||| | || || |||||||| ||||| ||| || ||| | |||| Sbjct 1422 CAAACCAAAAGAATCTTGGAACAATAAAGAGTTCTAATCTATGTTGTGAGATCATTGAAT 1363 Query 105024 TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATG 105083 ||| |||||| | |||||||| || || || ||||| | ||||| Sbjct 1362 ATACTTCTCCAGATGAAATTGCTGTGTGCAATCTTGCCTCAATATCACTCCC-------- 1311 Query 105084 TGGATCCAGAGACAAA--GA-CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTG 105140 | ||| || | ||||| || ||||||||||| ||||| || |||| || | Sbjct 1310 TAGATACATA-ACAAATGGAGTCTTTGATTATGAGAAACTTCATAAAGTAACTTTCTAAG 1252 Query 105141 TCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTC 105197 | ||||| || || |||||| | |||||| | |||| || || || |||| || Sbjct 1251 TTACCAAGAATCTTAACAGAATCATTGATGGCAATTACTATCCTTGCGATGAG---GCCA 1195 Query 105198 GTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 || || ||||||||||| | ||||| ||| |||||||| |||| || || |||| Sbjct 1194 AAAACTCAAATATGAGACATAGACCAATCGGTATCGGTGTTTAGGGACTAGCTGATG 1138 >seq7211 Length=2975 Score = 165 bits (182), Expect = 9e-36 Identities = 735/1136 (65%), Gaps = 35/1136 (3%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTC-AAC 104195 ||||||||| ||| | ||||||||| ||| |||||| |||| |||| |||||| || Sbjct 2265 AGAGACTACAACTACGATTATTTTGGATTCAGAACCCTGGAGA-GAGCCTATCTTTTAAA 2207 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 | | ||| | || || | ||||| ||||| | ||| | || || || | Sbjct 2206 AGATGGATCCAAAATA-ATTGAGAGACCACAACACATGCTGATGAGAGTCAGTATTGGAA 2148 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 104315 |||| ||| || | || || | || || ||||| || ||| || | || Sbjct 2147 TTCACAAGGAGGATCTAGAATCAGCTTTTGAAACATATGATTTAATGAGTCAGCTTTGGT 2088 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTT 104375 ||| |||||| || ||||| ||||| ||| |||| || |||| || ||||| || Sbjct 2087 TCACTCACGCTACCCCAACACTCTTTAATTCTGGAACTCCAAAGCCTTAAATGAGTTCTT 2028 Query 104376 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 104435 ||||| | | ||| || ||||| ||||| ||||||||| || ||||| | || Sbjct 2027 GCTTCTTATTAACCATGAAAGAGGATTCAATTGACGGTATCTTTGAGACTCTAA--GATA 1970 Query 104436 GTGCGCAA--ATCTCAAAGTGGGCTGGGGGTATTGGGATG-CACATCCATGATGTGAGAG 104492 |||| ||||||||| ||||| |||||||| | || || || | || | Sbjct 1969 AATCGCAGTTATCTCAAAGGCTGCTGGAGGTATTGGTGTCTCAGTGTCA-GACATCAGGG 1911 Query 104493 CCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 104552 | | | ||| ||| | || ||||| || | ||| |||| | || || ||||| Sbjct 1910 CAGCTGACTCTTACATTAGAGGAACAAACGGATACTCAAATGGATTGATACCTATGCTAA 1851 Query 104553 GCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCT 104608 || ||||| | ||| || | ||||| |||||| || || | |||| || || Sbjct 1850 AGGTTTTTAATGACACTGCAAGGTATGTTGATCAAGGAGG-CGGCAAAAGAAAAGGTGCT 1792 Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668 | ||||||||| |||| |||||||| || ||||| || |||||| | | | Sbjct 1791 TTTGCAGTCTATGTTGAACCATGGCATGCAGATATTTACGACTTCCTTCAACTCAGAAAG 1732 Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGA 104727 || || ||| | || ||| | | || | ||||| |||| ||||||||||||||||| Sbjct 1731 AATCATGGTAAAGAAGAGAA-CAGAGCAAGAGATCTGTTCTATGCTCTCTGGATTCCAGA 1673 Query 104728 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGG 104786 | ||||||| || |||||| ||| || | ||| | | | ||||| || || | Sbjct 1672 CTTATTCATGAGAAGGGTTGAGAAGAATGAAGACTGGACATTGATGTGTCCCAACGAATG 1613 Query 104787 CACCTGGTCTCTC-CGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 | || || | | ||| | ||| ||||| ||||| ||||| ||||||| Sbjct 1612 C-CCAGGATTAACAACATGTTG-GGGAGAGGAATTTGATAAACTTTATGAGGAGTACGAA 1555 Query 104846 GAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG--TGTGGAAAGCTATTCTCA 104903 || || | | |||| | ||| |||| | |||| ||| | Sbjct 1554 ATTTCCGGACGAGGAAGAAAGACGATCAAGGCT--AGATGGCTATGGACCTAGATTGTTG 1497 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 | || || || ||||| ||||| || ||||| |||||||| | |||||| ||| Sbjct 1496 AATCATAAGTTGAAACTGGGACACCCTATATGCTGTACAAAGATACTTGTAACAGAAAAT 1437 Query 104964 GTAATCAAAAGAAT-TTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022 ||||||| | ||| |||| ||| || || || ||||| ||||| |||||| | || Sbjct 1436 CTAATCAACAAAATCTTGGTTGT-ATAAAATCCTCGAATCTTTGTACTGAAATCGTAGAG 1378 Query 105023 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 105082 ||||| | ||| || | ||||| |||||||| || || || || ||| | | | Sbjct 1377 TTTACTAGCCCAGACGAAATTGCTGTCTGTAACCTTGCTTCTATAGCACTCAATAGATTT 1318 Query 105083 GTGGATCCAGAGAC-AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 || | |||||| ||||| | ||| ||||| || | ||| | || || || | | Sbjct 1317 GTTATTAAAGAGACTAAAGA-GTATGACTATGAGAAGTTACACTATGTAACCAAGAGAAT 1259 Query 105142 CACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCG 105198 |||||| || ||||||| ||||||||| ||| || || | ||| ||| Sbjct 1258 CACCAAGAATCTAAACAAGATTATTGATAACAATCACTATCCTATCCCTGA---AGCTAA 1202 Query 105199 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 | || ||| | ||||| | ||||| ||| | |||||||| || |||| |||| Sbjct 1201 ATATTCAAATCTTAGACATAGACCAATCGGTATTGGTGTTCAAGGATTCGCAGATG 1146 >seq15602 Length=1555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTT-GCTGAGCG 94808 || ||||| |||||||| | || ||| ||| | || | || || || || ||| | Sbjct 850 AAAAAAGCTGATTGGGCACTCAAATGGATTGG---AGAGAC-CGCTCAATTCGCCGAGAG 905 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 ||| | || || || ||||||||| || ||||| ||||| ||||||||| | |||| Sbjct 906 ACTTGTAGCCTTCGCAGCTGTTGAGGGCATATTCTTTTCTGGCTCCTTCTGCTCAATTTT 965 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 ||||| |||||||| ||||| |||||||||||| ||||| || || | || || | Sbjct 966 CTGGCTAAAGAAGCGTGGTCTTATGCCAGGTCTCACATTCTCAAATGAATTGATTTCAAG 1025 Query 94929 TGACGAGGG 94937 ||||| || Sbjct 1026 AGACGAAGG 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583116151321600