Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15602 89.7 6e-13 >seq15602 Length=1555 Score = 89.7 bits (98), Expect = 6e-13 Identities = 327/503 (65%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| ||||| ||||||||||| || || | || || |||||||| ||||||||| Sbjct 1034 CCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACCACGCTTC 975 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | |||||||| ||| ||||| ||||| || ||| || ||| Sbjct 974 TTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGCTGCGAAG 915 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC--ATCCAAGTCTGAGCCCATTCAG 74946 || ||||| | | ||||| | || | || ||||| | | ||||| |||| Sbjct 914 GCTACAAGTCTCTCGGCGAATTGAGC--GGTCTCTCCAATCCATTTGAGTGCCCAATCAG 857 Query 74947 CTTTTCGTTTG--ACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 ||||| || | || | || | | | | || |||| |||||| | | || |||| Sbjct 856 CTTTT--TTAGCTACTACTGGTATATTGTGGACAGCTTTGAAGAGAAATTCTTTTTCTTG 799 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 || || | | | ||||||| | ||| || || || || || || ||| | Sbjct 798 TGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTTCACTGTGGATGTTCTCCAT 739 Query 75065 GAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA-TCCTTTGAAAAAT 75123 | | |||| | | |||||| | | ||||| | | || || | | | || | ||| Sbjct 738 CATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCA-CT-TAGATTTCAGTGCAGAAT 681 Query 75124 -TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATT 75182 || | | ||| || | || || ||||| || || || || || || || || Sbjct 680 CTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAAAGAAGGCTAGAACATGC 621 Query 75183 TTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAA 75242 || |||||||| | ||| | |||| ||||| | ||||||||||| | || || | | Sbjct 620 TTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCCTTAATATCAGTAGCTAGA 561 Query 75243 TCAATCTCCTCGACCGTCCAGAA 75265 ||||| || || |||||||| Sbjct 560 TCAATTTCTTCTGAAGTCCAGAA 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547080290432000