Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5287 172 6e-38 seq55 156 5e-33 seq18108 116 4e-21 seq6367 114 1e-20 seq18912 107 2e-18 seq15602 87.8 2e-12 >seq5287 Length=1089 Score = 172 bits (190), Expect = 6e-38 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | ||||| || ||||| |||||||||||||| || |||||||| |||||| || Sbjct 413 ATGTAGATCTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGATGTTGAGCCATCC 472 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| |||| ||||||||||| |||||||||||||| || || || || Sbjct 473 GATACCATTGAAAACGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAA 532 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| || ||||||||| | || |||| | | ||||| |||| || ||| Sbjct 533 TAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAAT 592 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | ||||||||||| ||||| || Sbjct 593 ATTCAAAAGGAATCTACTCTCCA 615 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| |||||||| || || || ||||| || Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| || ||| ||||||| || || ||||| || ||||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || || || ||||||||||| ||||| | | || || |||||||||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 || ||||||||||||| ||||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCA 843 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||| ||||||| || ||||| | || || ||||||||||| | || |||||| || Sbjct 182 ATCATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCA 241 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | |||| |||| | ||||| || || || || ||||| || || || || || Sbjct 242 TCTGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGAT 301 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||| | || || || ||||| ||| | | || || | | |||||| | ||||| Sbjct 302 CAACAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTAC 361 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || |||| || ||||| ||||| ||| | ||| Sbjct 362 AACATCCAGAAAGAATCTACTCTCCATTTGGTC 394 >seq55 Length=1219 Score = 156 bits (172), Expect = 5e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| || ||||| ||||| ||||| || || |||||| || Sbjct 823 AATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATC 882 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| || || |||||||||| ||||| || || || || Sbjct 883 AGATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCA 942 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || || |||||||||||||| ||||||| | || || |||||||||| Sbjct 943 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAA 1002 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||||||||| || || ||||| Sbjct 1003 CATCCAAAAGGAGTCAACCCTTCA 1026 Score = 136 bits (150), Expect = 5e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| ||||| ||||| || | || |||||| | | Sbjct 140 ATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCT 199 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || || ||||| || || || || || || || Sbjct 200 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 259 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| ||||| |||||||||||||| | | ||||| ||||| || Sbjct 260 CAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTACAAC 319 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||||||||| || ||||| ||| | ||| Sbjct 320 ATCCAAAAGGAGTCAACTCTCCATTTGGTC 349 >seq18108 Length=1037 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| | || | ||||| |||||||| ||||||| || ||| || Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCA 694 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| |||||||| ||||| || || ||||| | || Sbjct 695 GATAACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTCA 754 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||| |||||||| || || || || || | | | || || | |||||||| Sbjct 755 CAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAACGTTATCTGACTATAAC 814 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || |||| ||||| ||| ||||| |||| Sbjct 815 ATCTAAAAAGAATCAACTATTCATTTAGT 843 >seq6367 Length=732 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| | ||||| |||||||| | || || ||||||||||||||||| || ||| | Sbjct 628 AATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCCTC 569 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | || | ||||| || |||||||| || || || || || || || || Sbjct 568 TGATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGATCA 509 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || ||||| || ||| | | || |||| | ||| | | || || || Sbjct 508 ACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTACAA 449 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| |||||||| | |||||| | ||| | || || Sbjct 448 CATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGG 401 >seq18912 Length=238 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || ||||||||||| || || || || |||||| | Sbjct 92 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGACGTTGAGCCTTC 151 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| ||||| || | ||||| || || ||||||||||| || ||||||||||| || Sbjct 152 TGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCA 211 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | || || || || || ||||| Sbjct 212 ACAGAGACTCATCTTCGCCGGCAAGCA 238 >seq15602 Length=1555 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || || || ||||||||||| || ||||| || |||||||||||||| ||||| || Sbjct 924 TGTTGAGGGCATATTCTTTTCTGGCTCCTTCTGCTCAATTTTCTGGCTAAAGAAGCGTGG 983 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 || ||||||||||| | || || || || |||| || | ||||| || Sbjct 984 TCTTATGCCAGGTCTCACATTCTCAAATGAATTGATTTCAAGAGACGAAGG 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570168963020800