Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5287 143 2e-29 seq18108 111 1e-19 seq55 111 1e-19 seq6367 105 6e-18 seq18912 96.9 3e-15 >seq5287 Length=1089 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || || || ||||||||| | || |||||||| || || || ||| Sbjct 413 ATGTAGATCTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGATGTTGAGCCATCC 472 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||| || || || |||||||||||| Sbjct 473 GATACCATTGAAAACGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCAA 532 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||| || ||||||||||| || ||| | || |||||||| Sbjct 533 TAGAGACTCATTTTCGCCGGTAAGCAATTGGAAGATGGTAGAACCCTCTCAGATTACAAT 592 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||||||||| || || | || ||||| Sbjct 593 ATTCAAAAGGAATCTACTCTCCACTTGGT 621 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| |||| || || || || ||||| || Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||| | ||||||||||| || |||||||| ||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | || ||| | || |||| || || ||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||| || ||| | || |||||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTT 850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||| | || || ||||| || | || || ||| ||||||| | || || || || || Sbjct 184 CATGTAAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCATC 243 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || ||||| || ||||| || ||||||||||| Sbjct 244 TGACACTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCA 303 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | ||| || || | || |||||| | ||| | || || ||||| Sbjct 304 ACAGAGACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAA 363 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || || || || || | |||||||| Sbjct 364 CATCCAGAAAGAATCTACTCTCCATTTGGT 393 >seq18108 Length=1037 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| | ||| | ||||| ||| |||| ||||||| ||||| || || Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCA 694 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| | |||| | |||||||||||||||||||| || ||| ||||| | Sbjct 695 GATAACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTCA 754 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | |||||| || |||||||| | || ||| | | || |||| || || || || Sbjct 755 CAGAGACTAATATTTGCTGGCAAACAGCTTGATGAC-GGTAGAACGTTATCTGACTATAA 813 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| |||| || || || | ||||| || Sbjct 814 CATCTAAAAAGAATCAACTATTCATTTAGT 843 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| ||||||| ||| || || || ||| | ||||| |||||| ||| | | Sbjct 179 ATGTAGATTTTTGTAAGAACACTCACTGGAAAGACAATTACCCTTGAATGTGAAGCCAAC 238 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| ||||| || || |||||||| |||||||||||| |||| || Sbjct 239 GAGACTTTTGAGTCCGTCAAGGCCAAGATCCAAGACAAGGAAGGCATACCAGCCGACTAA 298 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| | | || | || |||||||| || ||||| Sbjct 299 CAGAGACTTATCTTTGCTGGCAAACAGTTAGAAGA 333 >seq55 Length=1219 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || || || || || ||| | || |||||||| || || || || Sbjct 368 ATGTAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGAGCCATCA 427 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || ||||||||||| ||||| || |||||||||||| Sbjct 428 GACACCATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAA 487 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| | ||||| | ||| | ||| |||||| Sbjct 488 CAAAGACTTATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAAC 547 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||||||||| || | ||||| || Sbjct 548 ATTCAAAAGGAGTCAACTCTCCATTTAGT 576 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| |||| || | || || || || || Sbjct 140 ATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCT 199 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||||||||| || |||||||||||| Sbjct 200 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 259 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | || ||| | ||| | || |||||| Sbjct 260 CAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTACAAC 319 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | |||||||| Sbjct 320 ATCCAAAAGGAGTCAACTCTCCATTTGGT 348 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || || || ||||| ||| | || || || || || || || || Sbjct 596 ATGTAAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGAGCCTTCT 655 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || ||||| || ||||| || || ||||||||| Sbjct 656 GACACTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 715 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || |||||| | |||||| | ||| || || || ||| Sbjct 716 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAAC 775 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||||||| ||| | || |||||| Sbjct 776 ATCCAAAAGGAGTCTACCCTCCACTTGGTT 805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | ||||| || || || || || || Sbjct 824 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATCA 883 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || | ||||| ||||| || |||||||||||| Sbjct 884 GATACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCAA 943 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | || || | || |||| || || ||| Sbjct 944 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAAC 1003 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||||||||| ||| | || |||||| Sbjct 1004 ATCCAAAAGGAGTCAACCCTTCACTTGGTT 1033 >seq6367 Length=732 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| |||| || ||| ||||||||||||| || || || || Sbjct 627 ATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCCTCT 568 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || ||||| || |||||||| || || || |||||| Sbjct 567 GATACCATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGATCAA 508 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || | |||||||| | ||| | || ||||||||| Sbjct 507 CAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTACAAC 448 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||| || || || | || ||||| ||| Sbjct 447 ATCCAAAAAGAATCAACTCTTCACTTGGTCTTG 415 >seq18912 Length=238 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || || || || Sbjct 93 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGACGTTGAGCCTTCT 152 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||||| ||||| || || || ||||| ||||| || || || |||||| Sbjct 153 GACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 212 Query 27108 CAGCGTTTAATATACGCCGGCAAACA 27133 ||| | | || | ||||||||| || Sbjct 213 CAGAGACTCATCTTCGCCGGCAAGCA 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434810540236800