Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq678 132 2e-26 >seq678 Length=1606 Score = 132 bits (146), Expect = 2e-26 Identities = 295/437 (68%), Gaps = 8/437 (2%) Strand=Plus/Plus Query 38963 TGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGT 39022 |||||||| || || |||||||| | |||| || || | || | ||| | || Sbjct 30 TGATTTTCAACTAGACCGCAATATTCGGTACCTCTATCCGTAAGAATCCTTAATAGTGGC 89 Query 39023 AAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATA 39082 | | | || || || |||| | |||||| ||||| || || |||| | | ||| Sbjct 90 ACATCATGTTCTTGGAACCATGGAAGCACTTTCTCATTTAGTGCATGTGCAGAAGTAATA 149 Query 39083 GCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTT 39142 || || || ||||| |||| |||||| || | | | |||||||||||||| ||| Sbjct 150 GCTGTTTTTTCAGTATATAGTTGTGCAAATGCAATTCTTGAATAAGTATCAATAAAGGTT 209 Query 39143 TGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCA 39202 || ||||| || | ||| || || || | | | |||||| || ||||||||||||| ||| Sbjct 210 TGCTGATAGATCCTACCAACACCCTTCATGGTACCCACAAAGTAAGTATCTTGTGAACCA 269 Query 39203 AGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTA-CG 39261 ||||| || || || | ||||||||||||||| || || | |||| |||| | Sbjct 270 AGATAACCTGGATGCTCAGTTTCAATTTCACCATGAGC---TTCTTTTTCTAGCTTAGCT 326 Query 39262 CTCTAAGGC--TTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTTT 39319 ||| | || || || ||| ||| | || | |||||| | || ||||| | | Sbjct 327 TTCTCAAGCATTTTTAGTTGTTCTTCTGTTAGAAGAATACCGTCTTGAGCAACTTTTGCT 386 Query 39320 TCCAGGGCGATTAATCTTTGCTTAA-AATTGGCAAGATGATGACGTAACCAAATCGAACG 39378 || | || |||| | | |||| || |||| | || ||||||||| || || || Sbjct 387 TCTAAAGCTTTTAAGCGCTTTTTAAGCGTTTCCAAG-TCATTACGTAACCAGATAGACCG 445 Query 39379 TACACCTCCTGCTGAAA 39395 ||||| | ||||||| Sbjct 446 GACACCACTAGCTGAAA 462 Score = 132 bits (146), Expect = 2e-26 Identities = 295/437 (68%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 38963 TGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGT 39022 |||||||| || || |||||||| | |||| || || | || | ||| | || Sbjct 1577 TGATTTTCAACTAGACCGCAATATTCGGTACCTCTATCCGTAAGAATCCTTAATAGTGGC 1518 Query 39023 AAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATA 39082 | | | || || || |||| | |||||| ||||| || || |||| | | ||| Sbjct 1517 ACATCATGTTCTTGGAACCATGGAAGCACTTTCTCATTTAGTGCATGTGCAGAAGTAATA 1458 Query 39083 GCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTT 39142 || || || ||||| |||| |||||| || | | | |||||||||||||| ||| Sbjct 1457 GCTGTTTTTTCAGTATATAGTTGTGCAAATGCAATTCTTGAATAAGTATCAATAAAGGTT 1398 Query 39143 TGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCA 39202 || ||||| || | ||| || || || | | | |||||| || ||||||||||||| ||| Sbjct 1397 TGCTGATAGATCCTACCAACACCCTTCATGGTACCCACAAAGTAAGTATCTTGTGAACCA 1338 Query 39203 AGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTA-CG 39261 ||||| || || || | ||||||||||||||| || || | |||| |||| | Sbjct 1337 AGATAACCTGGATGCTCAGTTTCAATTTCACCATGAGC---TTCTTTTTCTAGCTTAGCT 1281 Query 39262 CTCTAAGGC--TTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTTT 39319 ||| | || || || ||| ||| | || | |||||| | || ||||| | | Sbjct 1280 TTCTCAAGCATTTTTAGTTGTTCTTCTGTTAGAAGAATACCGTCTTGAGCAACTTTTGCT 1221 Query 39320 TCCAGGGCGATTAATCTTTGCTTAA-AATTGGCAAGATGATGACGTAACCAAATCGAACG 39378 || | || |||| | | |||| || |||| | || ||||||||| || || || Sbjct 1220 TCTAAAGCTTTTAAGCGCTTTTTAAGCGTTTCCAAG-TCATTACGTAACCAGATAGACCG 1162 Query 39379 TACACCTCCTGCTGAAA 39395 ||||| | ||||||| Sbjct 1161 GACACCACTAGCTGAAA 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160090273843200