Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5287 172 1e-37 seq6367 170 4e-37 seq55 170 4e-37 seq18912 122 2e-22 seq18108 116 9e-21 >seq5287 Length=1089 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 |||||||| || | |||||| ||||| || |||| ||||||||| || | ||| || ||| Sbjct 858 AGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAAAGAGTTCTT 799 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || || ||||| |||||||||||||| | ||||||||| || |||| ||||| Sbjct 798 CCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGAATACCTTCT 739 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||||| ||||| || ||||| || || ||||| || |||||| ||||| ||| Sbjct 738 TTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACGTCGAGGGTG 679 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| || || | ||||| Sbjct 678 ATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||||||| | ||| ||||| || || ||||| || || ||||| | ||||| || Sbjct 630 AGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAGAGGGTTCTA 571 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| ||||| || ||||| || || | | ||| || || || | ||| ||| Sbjct 570 CCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGGATTCCCTCC 511 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || || || |||||||||||| ||||| || || ||||| || |||||| Sbjct 510 TTGTCTTGAATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAACATCAAGAGTG 451 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || ||||| || || | || ||| Sbjct 450 ATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTACAT 413 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||||||| | || ||||| || ||||| |||||||| || || | ||||| || Sbjct 402 AGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGGGTTCTG 343 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| | || ||| || ||||||||||| | ||||| || || || | |||||| Sbjct 342 CCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACCTTCC 283 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || |||||||| || || ||||| || |||||||| ||||| || | || Sbjct 282 TTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACATCTAAGGTA 223 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || |||||||| || | |||||||| || Sbjct 222 ATAGTCTTTCCAGTTAATGTCTTTACGAA 194 >seq6367 Length=732 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||||||||| || |||||||||||||| ||||| | | ||| || Sbjct 409 AAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCT 468 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| || ||| || || ||||| || | |||||| ||||| || | ||||| Sbjct 469 TCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGGATACCTTC 528 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || ||||| ||||| || ||||| |||||||| |||||| || || || ||||| Sbjct 529 TTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACATCAAGAGT 588 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| | |||||| || || | || |||||| Sbjct 589 AATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTT 630 >seq55 Length=1219 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | |||||| || ||||| |||||||||||||| || | ||| || ||| Sbjct 1041 AGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTT 982 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || || ||||| || ||||||||||| | |||||| || || || | ||||||| Sbjct 981 CCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 922 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||||| |||||| || |||||||| || || || || ||||| ||||| || Sbjct 921 TTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGGTA 862 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| ||||| || || | |||||| Sbjct 861 ATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | || ||||| ||||| ||||| ||||| || || ||||| || Sbjct 585 AGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTG 526 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || ||||| || || |||||||| | |||||| || || || | ||||||| Sbjct 525 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 466 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || || || ||||||||||| || ||||| || |||||| Sbjct 465 TTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTG 406 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| ||||| || || | || ||| Sbjct 405 ATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | ||| || || ||||| |||||||||||||| || |||||| || Sbjct 814 AAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCT 755 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||| || || || || ||||| || || | |||||| || ||||||| ||||| Sbjct 754 GCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTC 695 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || |||||||| || |||||||| || |||||||| || || ||||| || Sbjct 694 CTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGT 635 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| ||||| || || || ||||| || || Sbjct 634 GATGGTCTTACCGGTAAGGGTCTTGACGAA 605 Score = 136 bits (150), Expect = 9e-27 Identities = 167/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | || ||||| ||||| ||||||||||| || || ||||| || Sbjct 357 AGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTG 298 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || || ||||| || ||||| || || | |||||| || || || | ||||| Sbjct 297 CCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 238 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| || || ||||| |||||||||||| ||||| || | ||| Sbjct 237 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTG 178 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTT 211123 || || || || || || ||||| || || | ||||| || ||||| Sbjct 177 ATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCATATT-TGGTT 132 >seq18912 Length=238 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| |||||||| || | ||||| || ||||||| |||||||||||||||||| Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATC 179 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || ||||| || |||| |||||| ||||| ||||| ||||| ||||| || Sbjct 178 TTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTGCCG 119 Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || | ||||||| Sbjct 118 GTCAGGGTCTTGACGAAGATCTGCATT 92 >seq18108 Length=1037 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||||| || ||||||| ||| || ||||| |||| ||||| || | ||||| || Sbjct 397 AAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCAGAGAGGGTTCT 338 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| | ||| ||||| || |||||||| | |||| ||| | || | ||||| Sbjct 337 GCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGTCGGCTGGTATGCCTTC 278 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| |||||||| || ||| || | || || | |||| || || || Sbjct 277 CTTGTCTTGGATCTTGGCCTTGACGGACTCAAAAGTCTCGTTGGCTTCACATTCAAGGGT 218 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || ||||||| | || ||| Sbjct 217 AATTGTCTTTCCAGTGAGTGTTCTTACAAAAATCTACAT 179 Score = 86.0 bits (94), Expect = 1e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | ||| || || | ||||||| | ||| ||||| | | ||||| Sbjct 624 AGTCTCAGCACCAAGTGGAGTGTTGCTTCTTTTTATACGTTGTAATCTGATAAAGTCCTG 565 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 | || || | ||||||||||| || |||| | | ||| |||| || ||||||||| Sbjct 564 CTGTCCTCTAATTGCTTGCCTGCAAATATAATTCTCTATTGATCAGCGGGGACTCCTTCC 505 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGT 211075 ||||| | |||||| ||||||| | || || | ||| ||| || |||||||| Sbjct 504 TTGTCTTAGATCTTGGCTTTCACGCTCTCAATAGAGTCGCTAGC-CTCGCATTCGAGAGT 446 Query 211076 GATCGTCTTTCCCGTGAGAGT 211096 || || ||||| ||||| || Sbjct 445 AATAGTTTTTCCAGTGAGGGT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158857343561600