Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq18108 96.9 2e-15 seq5287 95.1 8e-15 seq55 95.1 8e-15 seq6367 86.0 4e-12 >seq18108 Length=1037 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||| |||| | || || || || |||||||| | || || | | Sbjct 635 ATGCAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCA 694 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | |||||| | || | |||||| |||||||||||| | || | ||| | Sbjct 695 GATAACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTCA 754 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||||||||| |||||||| || || |||| | || ||| || || ||| Sbjct 755 CAGAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAACGTTATCTGACTATAAC 814 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||| || || | |||||||| | || || |||||||| Sbjct 815 ATCTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGAGGAGGA 862 >seq5287 Length=1089 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||| ||||| ||||| | | Sbjct 641 ATGCAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCA 700 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || ||| |||||||||||| | || || || ||| Sbjct 701 GACACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAA 760 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || || || || ||||| || |||| | | ||| | || || ||| Sbjct 761 CAAAGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAAC 820 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||| || ||||| | || || ||| |||| | ||||||| Sbjct 821 ATCTAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGAGGAGG 867 >seq55 Length=1219 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || |||||||| ||||| || || ||||| ||||| | || ||||| || Sbjct 137 AATATGCAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCC 196 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || || || |||||||||||| | || || ||| Sbjct 197 TCTGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGAT 256 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | | || || || || || ||||| || |||| | || | | || ||| Sbjct 257 CAACAAAGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTAC 316 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| ||||| || | ||||| || | || | ||||||| Sbjct 317 AACATCCAAAAGGAGTCAACTCTCCATTTGGTCCTCAGACTCAGAGGAGG 366 >seq6367 Length=732 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| |||| ||||| || || | ||||| || || || ||||| || || || || Sbjct 630 AAAATGTAGATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCC 571 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || || |||| | || | || || ||||||||| | || || || Sbjct 570 TCTGATACCATCGAGAACGTTAAGGCCAAGA-TTCAGGATAAAGAAGGTATCCCCCCTGA 512 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | | || |||||||| || | ||||||| | | | || || ||||| Sbjct 511 TCAACAAAGACTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAACCTTGTCTGATTA 452 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| |||||||| || || | || || || || || | ||||||| Sbjct 451 CAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGAGGAGG 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337927869278720