Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5287 163 7e-35 seq6367 158 3e-33 seq55 158 3e-33 seq18108 122 2e-22 seq18912 98.7 2e-15 seq13068 96.9 8e-15 >seq5287 Length=1089 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | |||||||| |||||||| |||| ||||| || | | ||||| Sbjct 402 AGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGGGTTCTG 343 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||||| || ||| |||||||||||||||| ||||| ||||| || ||||||||| Sbjct 342 CCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACCTTCC 283 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||||||||| ||| ||| ||| || ||||| || | || || ||||| || Sbjct 282 TTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACATCTAAGGTA 223 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || || || |||| ||| | || ||| Sbjct 222 ATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACAT 185 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||| || |||||||| |||| || || || || | | |||||| Sbjct 858 AGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAAAGAGTTCTT 799 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || || ||||| || ||||||||||||| |||||||||||| ||||||||||| Sbjct 798 CCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGAATACCTTCT 739 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| | ||||| ||| || || || |||||||| | ||| ||||| | ||| Sbjct 738 TTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACGTCGAGGGTG 679 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || | || || | ||| | |||||| Sbjct 678 ATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 Score = 129 bits (142), Expect = 1e-24 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | ||||||||| ||||| ||||| | ||||||||| | | ||||| Sbjct 630 AGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAGAGGGTTCTA 571 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | ||||| || ||||| || |||| | ||| ||||| || || || ||| Sbjct 570 CCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGGATTCCCTCC 511 Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||||| || ||| || ||||| ||| ||||| || || | || || || | || Sbjct 510 TTGTCTTGAAT-TTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAACATCAAGAGT 452 Query 225675 GATCGTCTTGCCCGT 225689 ||| |||||||| || Sbjct 451 GATGGTCTTGCCGGT 437 >seq6367 Length=732 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| ||| | ||| ||||| ||||||||||||| |||||||| | ||| ||||| Sbjct 409 AAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCT 468 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | || ||| || || ||||| |||| |||||| || || || |||||||| Sbjct 469 TCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGGATACCTTC 528 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || || || ||||| ||| || |||||||| || |||| || || || | || Sbjct 529 TTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACATCAAGAGT 588 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| ||||||||||| || | ||| | | |||||| Sbjct 589 AATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTT 630 >seq55 Length=1219 Score = 158 bits (174), Expect = 3e-33 Identities = 172/227 (76%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | |||||||| || || ||||||| ||||| || | ||||| Sbjct 357 AGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTTCTG 298 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || || ||||| |||||||| || |||| |||||| ||||| || |||||||| Sbjct 297 CCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 238 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| ||| ||| ||| |||||||| |||| || ||||| || ||| Sbjct 237 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTG 178 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTT 225722 || || ||||| || | || || | ||| | |||||| || ||||| Sbjct 177 ATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCATATT-TGGTT 132 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | |||||||| || || ||||| | ||||| ||| | ||||| Sbjct 585 AGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTG 526 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || ||||| ||||| |||||||||| |||||| ||||| || || |||||| Sbjct 525 CCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 466 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| ||| ||| |||||||||||||| | || ||||| | ||| Sbjct 465 TTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAAGAGTG 406 Query 225676 ATCGTCTTGCCCGT 225689 || ||||| || || Sbjct 405 ATGGTCTTTCCAGT 392 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||| || || || || ||||||| || || || | | |||||| Sbjct 1041 AGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTTCTT 982 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || || ||||| |||||||||||||||| |||||| ||||| || || |||||| Sbjct 981 CCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCTTCC 922 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| | |||||| ||| || ||| || || ||||| | || || || | || Sbjct 921 TTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGGGTA 862 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| || || | || || | ||| | ||||||| Sbjct 861 ATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| || || | |||||| || || || ||||||| || || || | ||||| Sbjct 814 AAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTCACTAAGGGTTCT 755 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| || || || |||||||| || |||| |||||| ||||| ||||||||||| Sbjct 754 GCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACCTTC 695 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||| ||||||||||| ||| || ||| || ||||| || | || || || | || Sbjct 694 CTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAGGGT 635 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| || || | || || | ||| | || ||| Sbjct 634 GATGGTCTTACCGGTAAGGGTCTTGACGAAGATTTACAT 596 >seq18108 Length=1037 Score = 122 bits (134), Expect = 2e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| | || ||||| | ||| |||||||| |||||||| || || | | ||||| Sbjct 397 AAGTCTTAAAACGAGGTGAATAGTTGATTCTTTCTGGACATTATAGTCAGAGAGGGTTCT 338 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||||| ||| || ||||| |||||||||| |||| ||||| || || ||||| Sbjct 337 GCCATCTTCTAACTGTTTGCCAGCAAAGATAAGTCTCTGTTAGTCGGCTGGTATGCCTTC 278 Query 225615 CTTGTCTTGGATCTT 225629 ||||||||||||||| Sbjct 277 CTTGTCTTGGATCTT 263 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | || | ||| |||||||||| || || || || | || ||||| Sbjct 852 AGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCAGATAACGTTCTA 793 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || ||||| || ||||| || || |||| ||| |||| ||||||||||| Sbjct 792 CCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGATGGAATACCTTCT 733 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| || || | ||| | ||| ||| | ||||| | |||||| | | ||| Sbjct 732 TTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCCACGGCAAGAGTG 673 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || || ||| | | || | |||||| Sbjct 672 ATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||||||| || | |||||| || | |||||||| || |||||||| | ||||| || Sbjct 624 AGTCTCAGCACCAAGTGGAGTGTTGCTTCTTTTTATACGTTGTAATCTGATAAAGTCCTG 565 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 | || |||| ||||| || || || |||| || | ||| || | || | |||||| Sbjct 564 CTGTCCTCTAATTGCTTGCCTGCAAATATAATTCTCTATTGATCAGCGGGGACTCCTTCC 505 Query 225616 TTGTCTTGGATCTT 225629 ||||||| |||||| Sbjct 504 TTGTCTTAGATCTT 491 >seq18912 Length=238 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| |||| ||||| || || ||||||||||||||||| |||||| Sbjct 238 TGCTTGCCGGCGAAGATGAGTCTCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATC 179 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || || |||| ||| || | || ||||| | ||||| |||||||| Sbjct 178 TTGGCCTTGACGTTCTCAATGGAGTCAGAAGGCTCAACGTCGAGGGTGATGGTCTTGCCG 119 Query 225688 GTCAAAGTTTTTATGAACACTTGCATT 225714 |||| || || | ||| | |||||| Sbjct 118 GTCAGGGTCTTGACGAAGATCTGCATT 92 >seq13068 Length=2237 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| ||||| ||||| || |||||||| || || |||||||| Sbjct 751 GAAGATTTGACCATCAGTAATTGAGATGACATTAGTTGGGATATAGGCTGAGACATCACC 810 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| || || | || || | ||| || || || ||||||||| Sbjct 811 AGCTTGGGTCTCAATAATTGGGAGGGCAGTAAGAGAACCACCACCA 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192228058568960