Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq15602 188 6e-43 seq8403 84.2 2e-11 >seq15602 Length=1555 Score = 188 bits (208), Expect = 6e-43 Identities = 573/873 (66%), Gaps = 17/873 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| |||||| ||||| |||||||||||| ||| ||||| | ||||| | ||||| Sbjct 1331 ACTCTCTTTTCAAAGAAGTTAGTTTTGCCTGTTAAAGAAATCATGTCCATCCATTCAAAT 1272 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTT-TAGAGCTACAAGCAATCGGTCAGCTAC 4390 ||||| | | ||| | ||| ||| ||| || | || | || ||| || || Sbjct 1271 GGATTC-TCGACTTGATAGTACTTTGGTACTCCTAGGGCAAATAGAAGTCTGTCTGCAAC 1213 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC-ACAGGTAGCG 4449 || || ||||| |||||||||| |||| || || || || ||| || ||||| | Sbjct 1212 GAACATGATGTACTGACTCATGAGTTTTGAGTTCATACCGATCAA-CTCGACTGGTAGTG 1154 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | | | ||||| ||| |||||||| || | | ||| || || ||| | | Sbjct 1153 ACTCACTTACGAACTCCAATTCAATAGTTACTGCGTTGGAGATAATCTCAAGGATTCTCT 1094 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569 | || || |||||| | || | | | |||||| ||||| |||| || Sbjct 1093 CGTTGGAGATTTTATTGTTGATGTGCTTGTAGAGGAGACACGCGAAATCGGTGTGCATAC 1034 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||| ||||| ||| || || || || | || ||||| | ||| | ||| | Sbjct 1033 CTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAGACCTGGCATAAGACCACGCTTCT 974 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| || || | | || || ||||||||||||||||| || || || || || | Sbjct 973 TTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAATATGCCCTCAACAGCTGCGAAGG 914 Query 4690 CTACTAATCGGGACCCGAACGAGCTG-GCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 |||| | || | || ||| || || | ||| ||||||||| | |||||| | | Sbjct 913 CTACAAGTC---TCTCG-GCGAATTGAGCGGTCTCTCCAATCCATTTGAGTGCCCAATCA 858 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACTTTTTTCAAA 4807 |||||||| || || || ||| | ||| || || | | | | |||||| Sbjct 857 GCTTTTTTAGCTACTACTGGTATATTGTGGACAGCTTTGAAGAGAAATTC-TTTTTCTTG 799 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 |||||| ||| ||||||| || || || ||| ||||| || || || || || Sbjct 798 TGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAAGTTTCACTGTGGATGTTCTCCAT 739 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 ||||| ||||| || || |||||||| || | |||| | ||| | || ||||| Sbjct 738 CATCATCTGGAATCCATAGAAACATCTAGCCTCAGGCACTTAGATTTCAGTGCAGAATCT 679 Query 4928 TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 | | || ||||| || |||||||||||| || ||||| || || | |||||| Sbjct 678 CTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCAGCAAAGAAGGCTAGAACATGCTT 619 Query 4988 TATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||||||| || | |||| || ||| | | ||| | | ||| ||| || Sbjct 618 AATAAAGTGTCTCTCGTTGTCA---TTGAGTCTCTCCCAATCCTTAATATCAGTAGCTAG 562 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 ||||| |||||| |||||| || | || | ||||||||| ||| ||||| Sbjct 561 ATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCTTTGTACATTTTCCAGATATC 502 Query 5105 AGGATACTGAATCGGAAGTATGACAAATCTGTT 5137 | || | || || || || ||||||||||| Sbjct 501 ATTGTATTTGATAGGTAGGATAACAAATCTGTT 469 >seq8403 Length=2409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 31810 CTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGC 31869 ||| || || |||| || || |||||||| ||||| || |||||||||| || || || Sbjct 353 CTATGGCCGTGTAGCCCCAAGGTCTGGATTAGCAGTCAAGAACTTTATCGATGTTGGCGC 412 Query 31870 GGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAA--TTGTGTTGTTTAATTTTGGA 31927 || || || ||| | |||||||||||| | || ||| || | || || ||||||||| Sbjct 413 AGGAGTCATTGATGCTGACTATAGAGGAGAAGT--GAAGGTTTTATTATTCAATTTTGGA 470 Query 31928 GAAAAATCATACAGTATAAAAAAGGGCGATAGGGTAGCTCAA 31969 ||| || | ||||| || || || || || |||||| Sbjct 471 GAACAAGACTTTAGTATTAATGTTGGAGACAGAGTTGCTCAA 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426946339406720