Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11890 279 7e-70 seq15602 259 7e-64 seq7211 235 8e-57 >seq11890 Length=3034 Score = 279 bits (308), Expect = 7e-70 Identities = 1166/1818 (64%), Gaps = 32/1818 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || ||| |||| | ||||| || |||||||||||| ||| ||| | |||||| Sbjct 435 GCTGGTCTTGTTCTAAGATAATATTGACCAGTTTTTAGTCCCTATTGCCAAGCATAGAAA 494 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || | ||||||| | | ||| || || |||| || || | || |||| Sbjct 495 TGAGCACTACTAAGTTTGGTAAAGGTAGCTTCAGCCATATATATGTTTAAGCTCTAACTT 554 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||| |||||||| | ||||| | |||| || || | ||||| | ||||||| Sbjct 555 TGACAGATGAAAGGTGCTCTAGCTCTGGCCAAATTAATGAGCTGCTTTTATGAAATTTCC 614 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGAACCA 77042 |||||||||||| | | | ||| | || | || | | | || | || || | Sbjct 615 CAAATAGTTTTGTAGAGATTTTTCAATTCTTGAGGGATTTCTTTAATCTGTTATACACTA 674 Query 77043 CCATC-TGATATA---ATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA 77098 |||| ||| | | || ||| | ||||||||||| || || | | | | Sbjct 675 CCATTGTGAGCCACCAACTG-ATTACGGACCTCATCATTCCATAAGTTAATATTGATGAG 733 Query 77099 AACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTA 77158 | |||||| | ||||||||| || ||||| || | | |||||| | || || Sbjct 734 ATCTCTAACCAAATGAGGATTGACGCACACGAATTCACCGGCAAGTACTCTTCTGGTATA 793 Query 77159 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGC 77218 || || | || ||||| || | | ||| || || || || ||||| | ||| ||||| Sbjct 794 GATGTTTGTTGTGTATGGCTCGAAACTTTCGTTATTACCTAAGATTTGGGAAGTTGAAGC 853 Query 77219 AGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 |||||||||||| || ||||| | |||||| ||| | ||| | | || | Sbjct 854 AGTTGGCATAGGAGCAACCAAAAGTGAATTTCTTGCACCGAACTTGATGACATCAGCTCT 913 Query 77279 TAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTATTGTAG 77335 | | | |||||| | || || || | ||| ||||||||| ||||| | Sbjct 914 CAATTTATCCCAATCGTATCTATTTGTTGGAAGTTTTTCATTCCAAAGATCATATTGGAA 973 Query 77336 AATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395 | || | ||| ||||| | | || ||||| || ||| || || || Sbjct 974 TAGACCCTGACTTAATGGAGATCCTGGGAAAGATTGATAAGCCCCCTCTACTTTGGCAAG 1033 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTT-ATTGAGAT 77454 ||| ||| | ||||| | | | | |||||||||||| ||||| ||||| ||||| | Sbjct 1034 TTCCATACTTGATTCCATAGATGCATGATAAATTGTTTCAAAAAT-TTCTTGATTGAACT 1092 Query 77455 CTTGTGCT-TCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCC 77513 | ||| || || ||||| ||| | | ||| |||| |||||| |||| |||| Sbjct 1093 GATAGGCTCTCTCATCT-TCAAATGGAATTTTGAGAAGCATAAGGGCATCAGCTAGTCCC 1151 Query 77514 TGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTC-TGGAATAGG 77572 | ||| || ||||| || |||||||||||| |||| || |||| || || | | | ||| Sbjct 1152 TAAACACCGATACCGATTGGTCTATGTCTCATATTTGAGTTTTTGGCCTCATCGCA-AGG 1210 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 ||| ||||| || || ||| | || ||||| | |||| || | | ||| Sbjct 1211 ATAGTAATTGCCATCAATGATTCTGTTAAGATTCTTGGTAACT----TAGAAAGTTACTT 1266 Query 77633 TA----GTTTAAGAAAATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATG 77688 || |||| | ||||||| ||||| | | | | | | | ||| || | Sbjct 1267 TATGAAGTTTCTCATAATCAAAGACTCCATTTGTTATGTATCTAGGGAGTGATATTGAGG 1326 Query 77689 CTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGAT 77748 | ||||| || || || | |||| | | ||||| || ||||| |||||||| Sbjct 1327 CAAGATTGCACACAGCAATTTCATCTGGAGAAGTATATTCAATGATCTCACAACATAGAT 1386 Query 77749 TACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCATGAGTCCTTA 77807 || || || || || || ||||| | |||||| ||| ||| || ||| || ||| Sbjct 1387 TAGAACTCTTTATTGTTCCAAGATTCTTTTGGTTTGATTTTCCATTAGCGTGA-TCTTTA 1445 Query 77808 TAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 77867 ||||| || | ||||| || || ||||| | ||| ||||| |||| ||| | | | Sbjct 1446 TAAAGCATGTAGGGAGTACCTGTCTCAATTTAACTTTCAATAATTGATTCCCAAA-GTTT 1504 Query 77868 C-TAGCTTTTATCATAGAT-TTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTT 77925 | | || || || | | || | ||| | |||||||| |||||||| || Sbjct 1505 CATTGCCTTGATAGTCTTTCTTCCAATACCT-TGGGATTCATATTTAGTATATAAGGCTT 1563 Query 77926 CAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACC 77985 |||| || ||||| ||| |||| | || | ||||||||| || | | | || Sbjct 1564 CAAACTCTTCTCCGTGAACTTCATAGAGGCCTTTGGCTTCATTTGGACAGAAAAGAGTCC 1623 Query 77986 AGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045 | ||||| | || | || | ||||| || ||||| || | ||| ||||||| |||| Sbjct 1624 AATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATCTGGAACCCAGAGAGCAAAGAATA 1683 Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105 ||||| | ||| | |||||| ||||| |||||| | || | || || || | | Sbjct 1684 AATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTTCTGAGTTGAAGGAAGTCAAAGA 1743 Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165 ||||| ||||||||| |||| || || || | || || || ||| || | Sbjct 1744 CATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAACCCTTTCTCTTTCCACCACCTT 1803 Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATG 78225 | || | |||||| || || | ||| ||||||| | ||| |||| || || || || Sbjct 1804 GGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGCATGGGAACAAGTCCATTTGAGT 1863 Query 78226 TTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTA 78285 |||||| ||||| || ||||| || | || | ||||| || | | || | Sbjct 1864 GTCCATTAGTTCCCTTGATGTAACTACCTGTGGCTCTGATATTGTGAACAGCAAGTCCAA 1923 Query 78286 TTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTT--TCAATGTATCGTAGATACCCTC 78343 ||| || || ||||||| || | ||| |||||| | | ||||| || || || | Sbjct 1924 CTCCACCAGCACTCTTAGAAATCAAAGC--AACGTTCTTAAGAGTATCATATATTCCGTG 1981 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 ||| ||||||| |||| | | ||| ||||||||| ||||| | | || || Sbjct 1982 AATAGAGTCATCCTTCATCATTAAAAGGAAACAGCTACTCATTTATGGTTTTGGGGTACC 2041 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 || || || | || || | |||||| || |||||| | ||| | || || ||||| Sbjct 2042 AGCGTTGAAAAGAGTAGGGGTTGCATGAGTGAACCATCTATCACTCATTAAGTTATATGT 2101 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||||| || | || || || || || || ||||| | || | | | |||||| Sbjct 2102 CTCAATTGCAGCATCAATATCAGTTTTGTGGATACCTACTGAAACTCTGAGAAGCATATG 2161 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||| ||||||||||| |||| ||| | |||||| | |||| | ||| | ||| || Sbjct 2162 CTGGGGTCTTTCAACGATCTTTCCATTGACTTTCAAAAGATATGCTCGTTCAAGAGTCTT 2221 Query 78584 AAAACCAAAATAGTTGTA 78601 | | || || || | ||| Sbjct 2222 ATATCCGAAGTAATCGTA 2239 >seq15602 Length=1555 Score = 259 bits (286), Expect = 7e-64 Identities = 421/601 (70%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| || | |||||| ||||| ||| ||||| || || |||||||| Sbjct 1056 ACACGCGAAATCGGTGTGCATACCTTCGTCTCTTGAAATCAATTCATTTGAGAATGTGAG 997 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| || ||||| || || ||||| || |||| ||| || ||||||||||| Sbjct 996 ACCTGGCATAAGACCACGCTTCTTTAGCCAGAAAATTGAGCAGAAGGAGCCAGAAAAGAA 937 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 |||||| || || || || || || ||||||||| || || || || || | | Sbjct 936 TATGCCCTCAACAGCTGCGAAGGCTACAAGTCTCTCGGCG-AATTGAG--CG--GTCTCT 882 Query 48320 CCA--CCGTT---GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 ||| || || ||||||||||||| || || ||| || || | | | ||| Sbjct 881 CCAATCCATTTGAGTGCCCAATCAGCTTTTTTAGCTACTACTGGTATATTGTGGACAGCT 822 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 || |||||||| | |||||| | || ||| |||| || || | |||| ||| Sbjct 821 TTGAAGAGAAATTCTTTTTCTTGTGGGTCACTAATTAAAGTGTCAATAAGAAGAGAATAA 762 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 |||| ||| || || || || |||||| ||||| || |||||||| || || | Sbjct 761 GTTTCACTGTGGATGTTCTCCATCATCATCTGGAATCCATAGAAACATCTAGCCTCAGGC 702 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | | | || || || |||| | ||||||||| ||||| ||||| || ||| |||| Sbjct 701 ACTTAGATTTCAGTGCAGAATCTCTGAGCCAAATTTTCATTAACTATACCGTCAGAAGCA 642 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||| || |||| ||||| |||||||| | | | |||||| | | ||| | | ||| Sbjct 641 GCAAAGAAGGCTAGAACATGCTTAATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAA 582 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 || || ||||| | | || ||| | |||||| | ||||| |||| ||| | | | Sbjct 581 TCCTTAATATCAGTAGCTAGATCAATTTCTTCTGAAGTCCAGAATGCAGCCATTTGATCT 522 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 || ||||| ||||| |||||| |||||| ||| || | ||||||||||| ||||||||| Sbjct 521 TTGTACATTTTCCAGATATCATTGTATTTGATAGGTAGGATAACAAATCTGTTTGGATTT 462 Query 48735 T 48735 | Sbjct 461 T 461 >seq7211 Length=2975 Score = 235 bits (260), Expect = 8e-57 Identities = 746/1145 (65%), Gaps = 30/1145 (3%) Strand=Plus/Plus Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 || ||||||||| ||||| ||||| |||||||| || ||||||||||| ||| ||| Sbjct 1141 AAGGGCATCTGCGAATCCTTGAACACCAATACCGATTGGTCTATGTCTAAGATTTGAATA 1200 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 ||||||||| || |||||||| | ||| | || ||||| || || ||||| | | Sbjct 1201 TTTAGCTTCAGGGATAGGATAGTGATTGTTATCAATAATCTTGTTTAGATTCTTGGTGAT 1260 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA-TCTTCCATCT-----ATAACAAA 77668 | || || | | || || | | ||| | |||| ||| |||||||| Sbjct 1261 TCTCTTGGTTACATAGTGTAACTTCTCATAGTCATACTCTTTAGTCTCTTTAATAACAAA 1320 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTG 77728 | || | |||||||| || || ||||| || || | || | | | | | | | | Sbjct 1321 TCTATTGAGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTC 1380 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 || || || ||||| ||||| |||| ||| || ||||||||||| || || Sbjct 1381 TACGATTTCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTT 1440 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 | | || || | || || || || ||| | || ||||| ||||||| | |||||| | Sbjct 1441 TCTGTTACAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAAC 1500 Query 77849 AATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATA 77908 ||| | |||| | |||||| || ||| | | | ||| | |||| || Sbjct 1501 AATCTAGGTCCATAGCCATCTAGCCTTGATCGTCTTTCTTCCTCGTCCGGAAATTTCGTA 1560 Query 77909 TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCC-AATCCAGGGCATTCAT 77967 | ||| || |||||||| ||||||||| ||| | ||||| |||||||| | Sbjct 1561 CTCCTCATAAAGTTTATCAAATTCCTCTCCCCAA-CATGTTGTTAATCCTGGGCATTCGT 1619 Query 77968 TTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTA 78027 | || |||||||||| |||||| ||| | || ||| | | |||| || | || || | Sbjct 1620 TGGGACACATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGAA 1679 Query 78028 TCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAA 78087 |||| |||||| || ||||||| | ||| | ||||| || || ||||||| | | Sbjct 1680 TCCAGAGAGCATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCTGA 1739 Query 78088 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAG 78147 | | || || || |||||| | |||||||||||| | ||| | ||| | | | || Sbjct 1740 GTTGAAGGAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACCTT 1799 Query 78148 GTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTG 78207 || ||| ||||| ||||| | ||| || || |||| |||| |||| | | ||| | Sbjct 1800 TTCTTTTGCCGCCTCCTTGATCAACATACCTTGCAGTGTCATTAAAAACCTTTAGCATAG 1859 Query 78208 GAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATAT 78267 | || | || || || ||| |||||||| ||| ||| || ||| | || | Sbjct 1860 GTATCAATCCATTTGAGTATCCGTTTGTTCCTCTAATGTAAGAGTCAGCTGCCCTGATGT 1919 Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 | || | || || ||||| || ||| || || | ||| | | | | Sbjct 1920 CTGACACTGAGACACCAATACCTCCAGCAGCCTTTGAGATAACTGCGATTTATCTTAGAG 1979 Query 78328 TATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAA--AACAGCTAGACA 78384 | || ||||||| || || || || |||| ||||| ||||| || | || || Sbjct 1980 TCTCAAAGATACCGTCAATTGAATCCTCTTTCATGGTTAATAAGAAGCAAGAACT---CA 2036 Query 78385 TTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTT 78444 ||| | | | |||||| | |||||| | ||| || | || || || ||||| | Sbjct 2037 TTTAAGGCTTTGGAGTTCCAGAATTAAAGAGTGTTGGGGTAGCGTGAGTGAACCAAAGCT 2096 Query 78445 CAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCC--TA 78501 | | || || |||||||||| ||||||||||| ||| | ||| |||||||| || Sbjct 2097 GACTCATTAAATCATATGTTTCAAAAGCTGATTCTAGATCCTCCTTG-TGAATTCCAATA 2155 Query 78502 CCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT-----TTT 78556 | | || | ||||| ||| || || ||||| |||| ||||| | || ||| Sbjct 2156 CTG--ACTCTCATCAGCATGTGTTGTGGTCTCTCAA-----TTATTTTGGATCCATCTTT 2208 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 || | || | | | |||| ||| | || |||||||| | ||| ||||||| || Sbjct 2209 TAAAAGATAGGCTCTCTCCAGGGTTCTGAATCCAAAATAATCGTAGTTGTAGTCTCTGTC 2268 Query 78617 GTAAA 78621 ||||| Sbjct 2269 GTAAA 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694496522137600