Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq55 158 3e-33 seq6367 138 3e-27 seq5287 129 1e-24 seq18108 93.3 1e-13 >seq55 Length=1219 Score = 158 bits (174), Expect = 3e-33 Identities = 170/223 (76%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| ||||| | ||| ||||| ||||| ||||| |||||||| ||| | ||| Sbjct 588 CTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGCTGAGGGTT 529 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||| || ||||| || || |||||||| || || || || | | ||||| Sbjct 528 CTGCCATCTTCAAGTTGCTTT--CCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATTC 471 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| |||||||| || |||||| |||| | | ||||||| ||| || |||| Sbjct 470 CTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGATGGCTCAACGTCAA 411 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || ||||| ||||| ||||||| || ||| Sbjct 410 GAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 123 bits (136), Expect = 6e-23 Identities = 164/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||||||||| | ||| ||||| ||||| |||||||||||||| || | ||| Sbjct 360 CTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCACTGAGGGTT 301 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || || || || || ||||| || ||||| || || || || || || | | ||| | Sbjct 300 CTGCCGTCCTCGAGTTGCTTT--CCAGCGAAAATGAGTCTTTGTTGATCGGGTGGGATAC 243 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 |||| || ||||| || || |||||| | || | | |||| || ||| || || | Sbjct 242 CTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGCTCAACGTCCA 183 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||||||||| || || ||||| ||||||| ||||| || Sbjct 182 AGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCATATT 137 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||||||| || | ||||| || ||||| ||||||||||| || || | | |||| Sbjct 1044 CTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAGTCTGAAAGAGTT 985 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || || || || ||||||||||| || || || || | | ||||||| Sbjct 984 CTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATTCCT 925 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || | || || ||||| | || | | ||||| ||| || || || Sbjct 924 TCCTTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGATGGCTCAACATCGAGG 865 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || || ||||| ||||| ||||||| |||||| Sbjct 864 GTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCATT 823 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGT 151942 || |||||||| || | || || |||||||| ||||||||||| || || |||| || Sbjct 816 CTAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATAGTC-ACTAAGGGT 758 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| || ||||| || ||| || ||||| || || || || || || | | || || Sbjct 757 TCTGCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGAGGAATACC 698 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| ||||| || || ||||| | || | |||| ||| ||| || || || Sbjct 697 TTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAAGGCTCGACATCGAG 638 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGA 152097 || || || || || || || ||||| ||||||| Sbjct 637 GGTGATGGTCTTACCGGTAAGGGTCTTGACGAAGA 603 >seq6367 Length=732 Score = 138 bits (152), Expect = 3e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | ||| | |||||||| || |||||||||||||||||||| | || ||| Sbjct 407 CTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTT 466 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| | || ||||| ||||| || || || || || | | ||| ||| Sbjct 467 CTTCCATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGGGATACCT 526 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || || || |||| | | | || || ||| || |||||| Sbjct 527 TCTTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGACATCAAGA 586 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||| || ||||| | |||||| ||||||| || |||||| Sbjct 587 GTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACATTTT 630 >seq5287 Length=1089 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| ||||| | ||| |||||||| ||||| ||||||||||| || | || ||| Sbjct 405 CTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGATAGGGTT 346 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||||| || || ||||||||||| ||||| || || | | ||| ||| Sbjct 345 CTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCGGGTGGGATACCT 286 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| | || | |||| || ||| || || | Sbjct 285 TCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGCTCAACATCTAAG 226 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGA 152097 |||||||| || || || | ||||| ||||||| Sbjct 225 GTAATAGTCTTTCCAGTTAATGTCTTTACGAAGA 192 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| ||||| | || |||||||| || ||||| || |||||||| | | ||| Sbjct 633 CTGAGTCTTAGGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAATCTGAGAGGGTT 574 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| | || |||||||| || || |||| || || | | |||||| Sbjct 573 CTACCATCTTCCAATTGCTTACCGGCGAAAATGAGTCTCTATTGATCGGGTGGGATTCCC 514 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||||||||| ||| || | || | | | || || ||| || |||||| Sbjct 513 TCCTTGTCTTGAATTTTAGCTTTCACGTTTTCAATGGTATCGGATGGCTCAACATCAAGA 454 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || ||||| ||||||| || ||| Sbjct 453 GTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTACAT 413 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| || || | ||||| || || || |||| |||||| || || | | |||| Sbjct 861 CTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTATAGTCTGAAAGAGTT 802 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || || || || ||||||||||| || || ||||| | | || ||| Sbjct 801 CTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTGGTCGGGTGGAATACCT 742 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || | ||| || ||||| |||| | ||||||| || || || || Sbjct 741 TCTTTGTCCTAAATCTTGGCCTTGACGTTCTCAATAGTGTCTGATGGTTCAACGTCGAGG 682 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| ||||| ||||||| ||||| Sbjct 681 GTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 >seq18108 Length=1037 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||||||| || | ||||| ||| || ||||||| |||||| || || | ||| ||| Sbjct 855 CTCAGTCTGAGTACTAAATGAATAGTTGATTCTTTTTAGATGTTATAGTCAGATAACGTT 796 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || || ||| || || || || || ||||| || | | || ||| Sbjct 795 CTACCGTCATCAAGCTGTTTGCCAGCAAATATTAGTCTCTGTGAATCGGATGGAATACCT 736 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||||||||| | |||| | || | | | ||||| ||| || ||||| Sbjct 735 TCTTTGTCTTGAATTTTGTTCTTGATGCTTTCAATGTTATCTGATGGCTCCACGGCAAGA 676 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || | || | || |||| ||||| Sbjct 675 GTGATAGTCTTACCGGTTAAGGTTCTAACAAAGATTTGCAT 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153527498752640