Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6367 143 6e-29 seq55 141 2e-28 seq5287 104 5e-17 seq18108 95.1 3e-14 seq3923 91.5 3e-13 >seq6367 Length=732 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||||| || | | || ||||||| Sbjct 436 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTTCCATCTTCCAACTACTTTCCGGCAA 494 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | |||||| ||| || ||||| || || || || ||||| || || ||| Sbjct 495 AGATGAGTCTTTGTTGATCAGGGGGGATACCTTCTTTATCCTGAATCTTGGCCTTAACGT 554 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || || | ||||| || ||||| || |||||||||||||||||||| | Sbjct 555 TCTCGATGGTATCAGAGGGCTCGACATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGA 614 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 615 CGAAGATCTACATTTT 630 >seq55 Length=1219 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||| |||||| ||| || | ||| || || |||||||| || || || Sbjct 786 TCCTTTTGGATGTTATAGTCACTAAGGGTTCTGCCGTCTTCGAGTTGTTTTCCAGCGAAA 727 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || |||||||| ||||| ||||||||||| || || ||| | Sbjct 726 ATGAGTCTTTGTTGATCGGGAGGAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTT 667 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| |||| ||||| ||||| ||||| |||||||| || | ||||| ||| Sbjct 666 TCAATAGTGTCAGAAGGCTCGACATCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACG 607 Query 283089 AATATCTGCAT 283099 || || | ||| Sbjct 606 AAGATTTACAT 596 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||| ||||| | ||| || | |||||||| ||||| || || || ||| Sbjct 1014 TCCTTTTGGATGTTATAGTCTGAAAGAGTTCTTCCATCCTCAAGTTGCTTACCAGCGAAG 955 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || || || || |||||||| | |||||| || || ||| | Sbjct 954 ATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCCTAGATCTTGGCCTTGACGTTT 895 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||| || || | || || ||||| || || |||||||| || | ||||| ||| Sbjct 894 TCAATAGTATCTGATGGCTCAACATCGAGGGTAATGGTCTTACCGGTGAGGGTCTTGACG 835 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 834 AAGATTTGCATT 823 Score = 120 bits (132), Expect = 6e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||||||||||| || || | |||||| || ||||| || || |||||| Sbjct 558 TCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAG 499 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || || || || ||||||||||| ||||| || || || | Sbjct 498 ATAAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTC 439 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || |||||||| ||||| || || | ||||| ||| Sbjct 438 TCGATGGTGTCTGATGGCTCAACGTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACG 379 Query 283089 AATATCTGCAT 283099 || |||| ||| Sbjct 378 AAGATCTACAT 368 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| || || | ||| ||||| ||||| || || || || Sbjct 330 TCCTTTTGGATGTTGTAGTCACTGAGGGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAA 271 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || || ||||| || |||||||||||||| || || || | Sbjct 270 ATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTT 211 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | || || || | ||||| || || || || | ||||||||| Sbjct 210 TCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACG 151 Query 283089 AATATCTGCATTTT 283102 || || ||||| || Sbjct 150 AAGATTTGCATATT 137 >seq5287 Length=1089 Score = 104 bits (114), Expect = 5e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| |||||||||||||||| || || | ||| || |||| | || || || || Sbjct 376 TTCTTTCTGGATGTTGTAGTCAGATAGGGTTCTGCCGTCTTCTAACTACTTTCCAGCGAA 317 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | ||||| || || ||||| ||||| ||||||||||| || || || | Sbjct 316 GATAAGTCTCTGTTGATCGGGTGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATT 257 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | || || || | || || ||||| || || || ||||| || Sbjct 256 TTCAATAGTGTCAGATGGCTCAACATCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTAC 197 Query 283088 GAATATCTGCAT 283099 ||| || | ||| Sbjct 196 GAAGATTTACAT 185 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| || ||||| || | || || | ||||| || | ||| || ||||| || Sbjct 604 TTCCTTTTGAATATTGTAATCTGAGAGGGTTCTACCATCTTCCAATTGCTTACCGGCGAA 545 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | | ||| || || || |||||||||||||| || || ||||| ||| | Sbjct 544 AATGAGTCTCTATTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCTTTCACGTT 485 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || || | || || || |||||||| ||||| || || | |||||||| Sbjct 484 TTCAATGGTATCGGATGGCTCAACATCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAAC 425 Query 283088 GAATATCTGCAT 283099 ||| |||| ||| Sbjct 424 GAAGATCTACAT 413 >seq18108 Length=1037 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| |||| || ||||||| || || | |||||| |||| ||||| || ||||| Sbjct 370 TTCTTTCTGGACATTATAGTCAGAGAGGGTTCTGCCATCTTCTAACTGTTTGCCAGCAAA 311 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | |||| ||| | || || || ||||||||||||||||| || || |||| Sbjct 310 GATAAGTCTCTGTTAGTCGGCTGGTATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGGA 251 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || | ||| || ||||| ||| || || || ||||| || || | || | || Sbjct 250 CTCAAAAGTCTCGTTGGCTTCACATTCAAGGGTAATTGTCTTTCCAGTGAGTGTTCTTAC 191 Query 283088 GAATATCTGCAT 283099 || |||| ||| Sbjct 190 AAAAATCTACAT 179 >seq3923 Length=4027 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/198 (71%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 312504 TTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCGGCTGCTTCCTTTGCAATG 312563 ||||||||||| |||||| ||| | || | || |||||| || || | ||| |||| Sbjct 1056 TTGACAATTGAAGCGAAGTTATCATCCATAACAATGATATCTGCAGCATGCTTGGCAACA 1115 Query 312564 TCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCCTTAAGAGCCGGGGCGTCG 312620 || ||||| | | ||||| ||| | ||||| || |||| ||||||||| || || || Sbjct 1116 TCAGTACCAGTAATACCCATAGCAAATCCGACATCGGCTTTCTTAAGAGCTGGTGCATCA 1175 Query 312621 TTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCCTTCATGAGCTG-AACCAA 312679 || | |||||| ||| || || || || | || || |||| | | ||| ||||| Sbjct 1176 TTTGTACCATCACCAGTCACGGCAACTACATCACCTAGCTCCTT-AAGTCCTGTAACCAG 1234 Query 312680 CTTATACTTATCCTCTGG 312697 | ||| ||||| ||||| Sbjct 1235 CAAATATTTATCTTCTGG 1252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046473118895360