Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6367 105 5e-18 seq5287 98.7 7e-16 seq55 98.7 7e-16 >seq6367 Length=732 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || ||||| |||||||| |||| |||||| || || ||||||||||||||||| | | Sbjct 401 CCTCCTCTAAGTCTCAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 460 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | | | || |||| || ||| ||||||||||| | | || ||||| | || Sbjct 461 AAGGTTCTTC-CATCTTCCAACTACTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGGGG 519 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | |||||| || ||| ||||| || | || |||| | ||||| || | || || | Sbjct 520 GATACCTTCTTTATCCTGAATCTT-GGCCTTAACGTTCTCGATGGTATCAGAGGGCTCGA 578 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || | ||||| ||||| ||||| | ||||| |||||||| | ||| Sbjct 579 CATCAAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAAGATCTACAT 627 >seq5287 Length=1089 Score = 98.7 bits (108), Expect = 7e-16 Identities = 168/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 44105 TTCATT--CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 |||||| || ||||| ||||| | |||| |||||| ||| ||||||| |||||| | Sbjct 875 TTCATTGACCTCCTCTGAGTCTTAGAACCAAGTGAAGGGTGGATTCCTTTTAGATGTTAT 816 Query 44163 AATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 | || | ||||| | |||| || || ||||| || || ||||| | | || || Sbjct 815 AGTCTGAAAGAGTT--CTTCCGTCCTCAAGTTGCTTACCTGCGAAGATAAGTCTTTGTTG 758 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | || | |||||| || ||| ||||| ||| | |||| | || ||||| | Sbjct 757 GTCGGGTGGAATACCTTCTTTGTCCTAAATCTTGGCCTTGAC-GTTCTCAATAGTGTCTG 699 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | || || ||||| || ||||||||||| |||||||||||||| Sbjct 698 ATGGTTCAACGTCGAGGGTGATAGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 641 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| ||||| | |||| || || || || || ||||||||||| || Sbjct 415 CATACCTCCTCTGAGTCTTAGGACCAAATGGAGAGTAGATTCTTTCTGGATGTTGTAGTC 356 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | || || || |||| || | || ||| || || ||||| | | ||| ||||| Sbjct 355 AGATAG--GGTTCTGCCGTCTTCTAACTACTTTCCAGCGAAGATAAGTCTCTGTTGATCG 298 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||||||| || ||||| ||| | || | || ||||| | | Sbjct 297 GGTGGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATAGTGTCAGATGGC 238 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || || | ||||| |||||||| || | ||||| |||||||||| |||||| Sbjct 237 TCAACATCTAAGGTAATAGTCTTTCCAGTTAATGTCTTTACGAAGATTTACATGAT 182 >seq55 Length=1219 Score = 98.7 bits (108), Expect = 7e-16 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 44106 TCATT--CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 ||||| || ||||| ||||| | |||| |||||| || ||||||||||||||| || Sbjct 1057 TCATTGACCACCTCTGAGTCTGAGAACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATA 998 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | | || || || ||||| || || ||||| | | || ||| Sbjct 997 GTCTGAAAGAGTT--CTTCCATCCTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGA 940 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | |||||||| ||| ||||| ||| | || | || || || | Sbjct 939 TCGGGTGGGATTCCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCAATAGTATCTGAT 880 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || | ||||| ||||| || ||||||||||| |||||||||||||| Sbjct 879 GGCTCAACATCGAGGGTAATGGTCTTACCGGTGAGGGTCTTGACGAAGATTTGCAT 824 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| ||||| | |||| || || || |||||||||||||||||| || Sbjct 370 CATACCTCCTCTGAGTCTGAGGACCAAATGGAGAGTTGACTCCTTTTGGATGTTGTAGTC 311 Query 44167 GGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 ||| || || |||| || || ||||| || || || || | | || ||||| Sbjct 310 ACTGAG--GGTTCTGCCGTCCTCGAGTTGCTTTCCAGCGAAAATGAGTCTTTGTTGATCG 253 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||| || || ||||| ||| | || | |||||||| | || Sbjct 252 GGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAGGGC 193 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || || || || || |||||||| |||||||||||||| Sbjct 192 TCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 140 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | || | || || || ||||||||| |||||||| Sbjct 601 TTACATACCACCTCTGAGTCTAAGGACTAAATGGAGAGTTGACTCCTTTTGAATGTTGTA 542 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| ||| || || | || || || ||||| || |||||||| | | || ||| Sbjct 541 GTCGCTGAG--GGTTCTGCCATCTTCAAGTTGCTTTCCAGCAAAGATAAGTCTTTGTTGA 484 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | |||||||| || ||||| ||| | | | |||||||| | Sbjct 483 TCGGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATGGTGTCTGAT 424 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || | || || |||||||| ||||||||||| |||||||| | ||| Sbjct 423 GGCTCAACGTCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTACAT 368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| ||||| | |||| ||| || || ||||||||||||||| || Sbjct 829 TTGCATTCCACCTCTAAGTCTGAGAACCAAGTGGAGGGTAGACTCCTTTTGGATGTTATA 770 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || || || || |||| || || || || || || || || | | || ||| Sbjct 769 GTCACTAAG--GGTTCTGCCGTCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGA 712 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | ||| | ||||||||| || ||||| ||| | || | || ||||| | Sbjct 711 TCGGGAGGAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTTTCAATAGTGTCAGAA 652 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || | || || ||||| || || |||||||| |||||||||| ||| Sbjct 651 GGCTCGACATCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGACGAAGATTTACAT 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359903354321280