Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5287 179 9e-40 seq55 165 2e-35 seq6367 159 8e-34 seq18108 116 9e-21 seq18912 100 7e-16 >seq5287 Length=1089 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||||||||| || ||| |||||| Sbjct 644 CAAATCTTCGTCAAGACCCTCACCGGTAAGACTATCACCCTCGACGTTGAACCATCAGAC 703 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| |||||| ||||||||||||| || || || ||||| ||| Sbjct 704 ACTATTGAGAACGTCAAGGCCAAGATTTAGGACAAAGAAGGTATTCCACCCGACCAACAA 763 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| || || || || || || ||||| |||||| | || |||||| || Sbjct 764 AGACTTATCTTCGCAGGTAAGCAACTTGAGGACGGAAGAACTCTTTCAGACTATAACATC 823 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || || | ||| | ||||||||| Sbjct 824 TAAAAGGAATCCACCCTTCACTTGGTTCTAAGACTCAGA 862 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| || || | || ||||| || || ||| | || || || || |||| Sbjct 189 AAATCTTCGTAAAGACATTAACTGGAAAGACTATTACCTTAGATGTTGAGCCATCTGACA 248 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || || ||||| ||||| || || || ||||| ||||| || || || || Sbjct 249 CTATTGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAACAGA 308 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||||||||| ||||| || | ||||| || || || || | || || ||| ||| Sbjct 309 GACTTATCTTCGCTGGAAAGTAGTTAGAAGACGGCAGAACCCTATCTGACTACAACATCC 368 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | |||||||| || || ||| | || | ||||||||| Sbjct 369 AGAAAGAATCTACTCTCCATTTGGTCCTAAGACTCAGA 406 >seq55 Length=1219 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || |||||||| || || ||||| Sbjct 827 CAAATCTTCGTCAAGACCCTCACCGGTAAGACCATTACCCTCGATGTTGAGCCATCAGAT 886 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| ||||||| ||||||||||| || || || ||| Sbjct 887 ACTATTGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGAATCCCACCCGATCAACAA 946 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| || || || || || |||||||| |||||| | || |||||| || Sbjct 947 AGACTTATCTTCGCTGGTAAGCAACTTGAGGATGGAAGAACTCTTTCAGACTATAACATC 1006 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || ||||| || || | ||| | ||||||||| Sbjct 1007 CAAAAGGAGTCAACCCTTCACTTGGTTCTCAGACTCAGA 1045 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || ||||| ||||| || ||||| || || || || ||||||||| Sbjct 374 ATCTTCGTCAAGACCCTCACTGGAAAGACCATCACTCTTGACGTTGAGCCATCAGACACC 433 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 |||||||| ||||| |||||||| ||||| ||||||||||| || || || ||| || Sbjct 434 ATCGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGA 493 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 |||||||| || ||||| || || |||||||| || || || ||| || ||| | ||| Sbjct 494 CTTATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACCCTCAGCGACTACAACATTCAA 553 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || ||| | || | ||||||||| Sbjct 554 AAGGAGTCAACTCTCCATTTAGTCCTTAGACTCAGA 589 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| |||||| | || || || ||| ||| Sbjct 143 CAAATCTTCGTTAAGACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCTGAC 202 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 203 ACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAA 262 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| ||||| || ||||| || || || || || || || ||| || Sbjct 263 AGACTCATTTTCGCTGGAAAGCAACTCGAGGACGGCAGAACCCTCAGTGACTACAACATC 322 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || ||||| || ||| | || | ||||||||| Sbjct 323 CAAAAGGAGTCAACTCTCCATTTGGTCCTCAGACTCAGA 361 Score = 136 bits (150), Expect = 1e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| || || || || || || || ||||||||||| || || || |||| Sbjct 600 AAATCTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGATGTCGAGCCTTCTGACA 659 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || || |||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 660 CTATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAACAAA 719 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 |||| || ||||| |||||||| |||||||| || || || ||| || |||||| ||| Sbjct 720 GACTCATTTTCGCTGGAAAACAACTCGAAGACGGCAGAACCCTTAGTGACTATAACATCC 779 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || | ||| | ||||| ||| Sbjct 780 AAAAGGAGTCTACCCTCCACTTGGTTCTCAGACTTAGA 817 >seq6367 Length=732 Score = 159 bits (176), Expect = 8e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || ||| || ||| Sbjct 621 ATCTTCGTCAAGACTTTGACGGGTAAGACTATTACTCTTGATGTCGAGCCCTCTGATACC 562 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||||||||| || ||||||||||| |||||||| ||||| || || || ||| || Sbjct 561 ATCGAGAACGTTAAGGCCAAGATTCAGGATAAAGAAGGTATCCCCCCTGATCAACAAAGA 502 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCA 178105 || ||||| |||||||| || | ||||||||||| || |||| | ||||| ||| |||| Sbjct 501 CTCATCTTTGCCGGAAAGTAGTTGGAAGATGGAAGAAC-CTTGTCTGATTACAACATCCA 443 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| || || | || |||||||| ||| Sbjct 442 AAAAGAATCAACTCTTCACTTGGTCTTGAGACTTAGA 406 >seq18108 Length=1037 Score = 116 bits (128), Expect = 9e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GACAC 177985 ||||| || | ||| ||||| ||||| || || ||||| || || |||| | || || Sbjct 185 ATTTTTGTAAGAACACTCACTGGAAAGACAATTACCCTTGAA-TGTGAAGCCAACGAGAC 243 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 | ||| |||||| ||||| || ||||| ||||| || || | ||| | || | Sbjct 244 TTTTGAGTCCGTCAAGGCCAAGATCCAAGACAAGGAAGGCATACCAGCCGACTAACAGAG 303 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||||||||| || || |||||| | |||||||| || || || | || ||||| ||||| Sbjct 304 ACTTATCTTTGCTGGCAAACAGTTAGAAGATGGCAGAACCCTCTCTGACTATAATGTCCA 363 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||| | || || ||||| ||||| || Sbjct 364 GAAAGAATCAACTATTCACCTCGTTTTAAGACTTAG 399 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || | ||| | || || || || ||||| || | ||||| ||||| Sbjct 638 CAAATCTTTGTTAGAACCTTAACCGGTAAGACTATCACTCTTGCCGTGGAGCCATCAGAT 697 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG-AATCCCTCCGGACCAGCA 178042 | ||| || | | |||| | || ||||| ||||||||||| | ||| |||| || || Sbjct 698 AACATTGAAAGCATCAAGAACAAAATTCAAGACAAAGAAGGTATTCCATCCGATTCA-CA 756 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||| || || || || |||||||| || || || || || | | || |||||| | Sbjct 757 GAGACTAATATTTGCTGGCAAACAGCTTGATGACGGTAGAACGTTATCTGACTATAACAT 816 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||||||||||| | ||| | || | ||||| ||| Sbjct 817 CTAAAAAGAATCAACTATTCATTTAGTACTCAGACTGAGA 856 Score = 91.5 bits (100), Expect = 4e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA-GAC 177983 |||| || || ||| ||||| |||||||| || || ||||| || | ||| ||| Sbjct 411 AAATATTTGTCCGAACCCTCACTGGAAAAACTATTACTCTCGAA-TGCGAGGCTAGCGAC 469 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || |||| ||| ||| ||||| | ||||| |||||| |||| | || || | Sbjct 470 TCTATTGAGAGCGTGAAAGCCAAGATCTAAGACAAGGAAGGAGTCCCCGCTGATCAATAG 529 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||| || || || || || | || || | |||||| | | ||||| ||||| Sbjct 530 AGAATTATATTTGCAGGCAAGCAATTAGAGGACAGCAGGACTTTATCAGATTACAACGTA 589 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| ||||||| || | || ||||||||||| Sbjct 590 TAAAAAGAAGCAACACTCCACTTGGTGCTGAGACTCAGA 628 >seq18912 Length=238 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||||||||| || || || ||| Sbjct 96 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGACGTTGAGCCTTCTGAC 155 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| ||||||||||| ||||| |||||||| ||||| || ||||| || || || Sbjct 156 TCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAACAG 215 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 |||| ||||||||||| || || Sbjct 216 AGACTCATCTTCGCCGGCAAGCA 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203425211528960