Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq155 123 3e-23 >seq155 Length=966944 Score = 123 bits (136), Expect = 3e-23 Identities = 254/376 (68%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 54254 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATC 54313 |||||||| ||| ||||||| ||||||||||| || || || || | || || Sbjct 375876 CCATTGGTGCCGCGGATATAGGAGCCACTGGCACGGATGTTGGAAACTGCCACGCCGATT 375817 Query 54314 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 54373 || || || || ||||| | || ||| | |||| |||||| ||||| ||||| || Sbjct 375816 CCGCCGGCAGACTTGGAGATCAGAGCACATTGCTTTAGCGTATCGTAGATTCCCTCGATG 375757 Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG--TGACGACTAGTTCCCG 54431 || || || ||| || || | ||||| ||||| ||| || || ||| |||| Sbjct 375756 CTGTCTCCCTGCATTTTCAGCAAGAAACACGACGACATCTGGGGTGCCGG--AGTGCCCG 375699 Query 54432 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491 |||| || ||||| || | ||||| || || | || || | |||| ||| |||| Sbjct 375698 CATTGAACAAGGTCGGGGTTGCGTGTGTGAAGAACCTTCTCGACATGAGATCGTAGGTCT 375639 Query 54492 CGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 54551 | | || | | | ||||| |||||| || || | ||||| | || ||||| Sbjct 375638 CCAGCGCAGCCTGGAGATCCCCGCAATGAATGCCACAGGCAGCCCGCATGATCAGGTGCT 375579 Query 54552 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAA 54611 | || | || ||||||||||||| | |||||| | |||||| || || | || || | Sbjct 375578 GTGGGCGCTCCACGATCTTGTTGTGGACTTTCAGAAGGTAGGACTTCTCGAGCGTCTTGA 375519 Query 54612 AACCAAAATAGTTGTA 54627 | ||||| |||| ||| Sbjct 375518 AGCCAAAGTAGTCGTA 375503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593649700314240