Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq342 116 3e-21 seq97 96.9 3e-15 >seq342 Length=642287 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || ||||||||| | || || || || || ||||||||||| Sbjct 493602 TACCGCCGCGCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCG 493661 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || ||| ||||| ||||| || |||||| |||| || |||||||| ||||| | Sbjct 493662 ACAGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 493721 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || || || || | |||| ||||| || ||| | Sbjct 493722 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAA 493781 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||| ||||| |||| || || ||||| |||||||| Sbjct 493782 CGTCCAAAGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493830 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | || ||||||||| | || || || || || ||||||||||| Sbjct 493376 CCGCCTCGCAAGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCGAA 493435 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || ||| ||||| ||||| || |||||| |||| || |||||||| ||||| || Sbjct 493436 AGGGTACGCCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 493495 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| || || || || | |||| ||||| || ||| || Sbjct 493496 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTGGCCTCAACA 493555 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||| ||||| |||| || || ||||| |||||||| Sbjct 493556 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 493602 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || || || || || ||||||||||| Sbjct 476278 TACCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAG 476337 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| ||||| || |||||| |||| || |||||||| ||||| | Sbjct 476338 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 476397 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || || || || | |||| ||||| || ||| | Sbjct 476398 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 476457 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || | ||| | ||| ||||| |||| || || ||||| |||||||| ||| Sbjct 476458 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATTGCT 476510 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | || ||||||||| | || || || || || ||||||||||| Sbjct 475596 CCACCTCGCAAGCGCAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGAA 475655 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| || |||||| |||| || |||||||| ||||| || Sbjct 475656 AGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTGGG 475715 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| || || || || | |||| ||||| || ||| || Sbjct 475716 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAACG 475775 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||| ||||| |||| || || ||||| |||||||| Sbjct 475776 TCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 475822 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || || || || || ||||||||||| Sbjct 475822 TACCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAG 475881 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| ||||| || |||||| |||| || |||||||| ||||| | Sbjct 475882 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 475941 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || || || || | |||| ||||| || ||| | Sbjct 475942 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 476001 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||| ||||| |||| || || ||||| |||||||| Sbjct 476002 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476050 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || || || || || ||||||||||| Sbjct 476050 TACCGCCTCGCAGGCGCAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAG 476109 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| ||||| || |||||| |||| || |||||||| ||||| | Sbjct 476110 AAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGTG 476169 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || || || || | |||| ||||| || ||| | Sbjct 476170 GGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCACTGGCCTCAA 476229 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||| ||||| |||| || || ||||| |||||||| Sbjct 476230 CGTCCAAGGTGATCGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 476278 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | || |||||||| | || || || || || ||||||||||| Sbjct 509315 CCGCCTCGCAAGCGCAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAA 509374 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| || || ||| |||| || |||||||| ||||| || Sbjct 509375 AGGGTACGGCCGTCCTCTAGCTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGTGGG 509434 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| ||| || || || | || | |||||| || ||| || Sbjct 509435 ATGCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCTATGGTGTCGCTGGCCTCAACA 509494 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | || ||||| |||| || || ||||| |||||||| ||| Sbjct 509495 TCCAAGGTGATTGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATCGCT 509545 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || || || || || ||||||||||| | || || || Sbjct 547857 CAGCACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGACCGTC 547916 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | ||| || |||||| |||| || |||||||| ||||| || ||||| |||||||| Sbjct 547917 CTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTC 547976 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| || ||| || || | ||| | ||| Sbjct 547977 CTGGATCTTAGCCTTGACATTGTCTATGGTGTCACTGGCCTCAACATCCAAGGTGATCGT 548036 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || |||| || || ||||| |||||||| ||| Sbjct 548037 CTTCCCCGTCAAGGTCTTGACAAAGATCTGCATCGCT 548073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || ||||||||| | || || || || || ||||||||||| Sbjct 493830 TACCGCCGCGCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCCG 493889 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || ||| ||||| ||||| || |||||| | || || |||||||| ||||| | Sbjct 493890 AAAGGGTACGCCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGCG 493949 Query 118630 GTATGCCCTCCTTGTC 118645 | ||||| ||||| || Sbjct 493950 GGATGCCTTCCTTATC 493965 >seq97 Length=1148689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || || || || || ||||||||||| || || || || Sbjct 996571 CAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGACAGGGTACGGCCGTC 996630 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || |||||| |||| || |||||||| ||||| || ||||| |||||||| Sbjct 996631 TTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTC 996690 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCG 118704 || || || || | |||| ||||| | ||| ||| || || | ||| | || Sbjct 996691 CTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGC-CTCAACGTCCAAGGTGATCG 996749 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || |||| || || ||||| ||||||||| Sbjct 996750 TCTTACCCGTCAAGGTCTTGACAAAGATCTGCATG 996784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || || | || ||||||||| | || || || || || ||||||||||| Sbjct 998977 CCGCCTCGCAAGCGCAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAA 999036 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || || | ||| || |||||| |||| || |||||||| ||||| || Sbjct 999037 AGGGTACGGCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 999096 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGAC 118690 ||||| |||||||| || || || || | |||| ||||| | ||| ||| || Sbjct 999097 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGC-CTCAAC 999155 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | ||| | ||| || || |||| || || ||||| ||||||||| Sbjct 999156 GTCCAAGGTGATCGTCTTACCCGTCAAGGTCTTGACAAAGATCTGCATG 999204 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || || || || || ||||||||||| | || || || Sbjct 999219 CAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCGTC 999278 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || |||||| |||| || |||||||| ||||| || ||||| |||||||| Sbjct 999279 TTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTC 999338 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCG 118704 || || || || | |||| ||||| | ||| ||| || || | || | || Sbjct 999339 CTGGATCTTAGCCTTGACATTGTCGATCGTGTCACTTGC-CTCAACATCCAAAGTAATCG 999397 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | ||||| |||| || || ||||| |||||||| ||| Sbjct 999398 TCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATCGCT 999435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433779176560096