Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq22 120 7e-22 seq1075 113 1e-19 seq1090 104 5e-17 >seq22 Length=1799166 Score = 120 bits (132), Expect = 7e-22 Identities = 543/841 (65%), Gaps = 25/841 (3%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || | ||||| || ||||||||||| ||||| || || ||||| ||||| Sbjct 588288 GTACTCTCCTACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATCATCTCCAT 588347 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| ||||| | | |||| || ||||| ||| | | Sbjct 588348 CCAGTCGAAGGGGTTGGACGAGTTGAAGATCTTGCTGTGTCCCAGTGCCGTCAACAGGCG 588407 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 || ||||| |||| |||||||| ||||| | || | | || ||||| | || Sbjct 588408 ATCTGCCACGAACTCGATGTACTGGGTCATCAAGTCCTTGTTCATGCCGATCAAATCGCA 588467 Query 157438 GGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCATG 157497 || || ||| | ||||| || | ||| || || ||| || || || || Sbjct 588468 GGACAGGGCCCCGCAGATGAACTCCCGCTCCACCTCCACCGCGCCGCGGATCATCTCGTG 588527 Query 157498 AACTCTCTCCCGCGGCAGCCTATTCTTGAG-ATGCTTGTAGATGAGAACGG--AAGCCGT 157554 ||| || || ||| | | || || |||| ||||| || | ||| | Sbjct 588528 AACGACATCTTCTGGAAGCTTGTGCTCCAGCATGCC-GTAGAGCAGGCATGCAAAGTCC- 588585 Query 157555 GGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 ||||| || || ||||| | || ||| || ||| | ||| | || ||| | | Sbjct 588586 -GCGTGTAGGCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAATGTCAGGCCCGGCATCAG 588644 Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCA- 157673 ||||||||||||||| ||| ||||||||| || || ||||| | | |||||||| Sbjct 588645 GCCGCGCTTCTTCAGCCAGAAGAGGGCGCAGAAGGAGCCGCTGAAGAGGATGCCCTCCAC 588704 Query 157674 GACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCCACTTC 157732 | ||| ||||| || | | ||| ||||||| | | || |||||||||||| | Sbjct 588705 GGCAGCAAAAGCC-ACCAAGCGCTC----GGTGAAGCTGCTCTCACGGTTCATCCACTGC 588759 Query 157733 TCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGATAG-ATCGCATGACGTG 157791 | ||||| || ||||||| | | | ||||| || ||||| | |||| | | | Sbjct 588760 ACAGCCCACAGAGCCTTCTGCTGAACGGCCGGCATGGTGTGGATGGCATCG-AAAAGGCT 588818 Query 157792 TCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAGAGAGTACGATTCGCCGTG 157851 || | |||| | | |||| ||| ||| || ||| || || ||||||| ||| || Sbjct 588819 GCTTTTCTCTGCAGGGTCCTTGATGTACTGCTCAATCAGGAGCGAGTACGTCTCGGAATG 588878 Query 157852 GACTGCT-TCCGTGGCCTCCTGGA--TTGCAAAATGCTGTCTGATCTGCGGAATCACAAT 157908 || || | ||| |||| ||||| | | ||||| ||| || |||||| | Sbjct 588879 GA-TGTTCTCCATGGCGATCTGGAAGCCGTAGAATGC--CCTGGCCTCAGGAATCTGCAC 588935 Query 157909 CTCGTTCTTAAAGTTGAGACCGATGTTCTCCATAACGATCTGGTCGAGCGACGCGAAGAA 157968 ||| | || | ||| |||||||| ||||| ||| | || ||||| Sbjct 588936 CTCCGTGGAGAACTGCGCGGCGAGGTTCTCCAGCACGATTCCGTCAGATGCAGCAAAGAA 588995 Query 157969 CGCCAACACCAGTTTTAAAAAGTGCTTCTCGTCGCTCGAAGCATC--CTCCCAGTCTTTC 158026 ||||| || | || | ||||||| |||| | ||| |||| | ||||||| || Sbjct 588996 GGCCAAGACGTGCTTCACGAAGTGCTGCTCG-CCTTCG-TTCATCGTCACCCAGTCCTTG 589053 Query 158027 GAGTCTCCGGACAGGTCAATCTCCTCGACTACCCAGAACAGAGCGGTCTGCTTCTTGTAC 158086 ||| | |||||| |||||||| || |||||| ||| |||||||||||| Sbjct 589054 TTGTCCTGCGCCAGGTCGATCTCCTCCGCTGTCCAGAATGAAGCCTCATGCTTCTTGTAC 589113 Query 158087 A 158087 | Sbjct 589114 A 589114 Score = 111 bits (122), Expect = 3e-19 Identities = 541/841 (64%), Gaps = 25/841 (3%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| |||| | ||||| || ||||||||||| ||||| | || ||||| ||||| Sbjct 595790 GTACTCTCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAAGGAGATCATCTCCAT 595849 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| || || ||||||| ||||| | | |||| || ||||| ||| | | Sbjct 595850 CCAGTCAAAAGGGTTGGACGAGTTGAAGATCTTGCTGTGTCCCAGGGCCGTCAACAGGCG 595909 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 || ||||| |||| |||||||| ||||| | || | | || ||||| | || Sbjct 595910 ATCGGCCACGAACTCGATGTACTGGGTCATCAAGTCCTTGTTCATGCCGATCAAATCGCA 595969 Query 157438 GGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCATG 157497 || || ||| | ||||| || | ||| || || ||| || || || || Sbjct 595970 GGACAGGGCCCCGCAGATGAACTCCCGCTCCACCTCTACCGCGCCGCGGATCATCTCGTG 596029 Query 157498 AACTCTCTCCCGCGGCAGCCTATTCTTGAG-ATGCTTGTAGATGAGAACGG--AAGCCGT 157554 ||| || || ||| | | || || |||| ||||| || | ||| | Sbjct 596030 AACGACATCTTCTGGAAGCTTGTGCTCCAGCATGCC-GTAGAGCAGGCATGCAAAGTCC- 596087 Query 157555 GGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 ||||| || || ||||| | || |||||| ||| | ||| | || ||| | | Sbjct 596088 -GCGTGTAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAG 596146 Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCA- 157673 ||||||||||||||| ||| ||||||||| || || || || | | |||||||| Sbjct 596147 GCCGCGCTTCTTCAGCCAGAAGAGGGCGCAGAAGGAGCCGCTAAAGAGGATGCCCTCCAC 596206 Query 157674 GACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCCACTTC 157732 | ||| ||||| || | | ||| ||||||| | | || |||||||||||| | Sbjct 596207 GGCAGCAAAAGCC-ACCAAGCGCTC----GGTGAAGCTGCTCTCACGGTTCATCCACTGC 596261 Query 157733 TCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGATAG-ATCGCATGACGTG 157791 | ||||| || ||||||| | | | ||||| || ||||| | |||| | || Sbjct 596262 ACAGCCCACAGAGCCTTCTGCTGAACGGCCGGCATGGTGTGGATGGCATCGAAAAGGCTG 596321 Query 157792 TCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAGAGAGTACGATTCGCCGTG 157851 ||| | ||| | | |||| ||| ||| || ||| || || ||||||| ||| || Sbjct 596322 TCT-TTCTCCGCAGGGTCCTTGATGTACTGCTCAATCAGGAGCGAGTACGTCTCGGAATG 596380 Query 157852 GACTGCT-TCCGTGGCCTCCTGGA--TTGCAAAATGCTGTCTGATCTGCGGAATCACAAT 157908 || || | ||| |||| ||||| | | ||||| ||| || |||||| | Sbjct 596381 GA-TGTTCTCCATGGCGATCTGGAAGCCGTAGAATGC--CCTGGCCTCAGGAATCTGCAC 596437 Query 157909 CTCGTTCTTAAAGTTGAGACCGATGTTCTCCATAACGATCTGGTCGAGCGACGCGAAGAA 157968 ||| | || | ||| |||||||| ||||| || | || ||||| Sbjct 596438 CTCCGTGGAGAACTGCGCGGCGAGGTTCTCCAGCACGATTCCATCAGAAGCAGCAAAGAA 596497 Query 157969 CGCCAACACCAGTTTTAAAAAGTGCTTCTCGTCGCTCGAAGCATC--CTCCCAGTCTTTC 158026 ||||| || | || | ||||||| |||| | ||| |||| | ||||||| || Sbjct 596498 GGCCAAGACGTGCTTCACGAAGTGCTGCTCG-CCTTCG-TTCATCGTCACCCAGTCCTTG 596555 Query 158027 GAGTCTCCGGACAGGTCAATCTCCTCGACTACCCAGAACAGAGCGGTCTGCTTCTTGTAC 158086 ||| | |||||| |||||||| || |||||| ||| |||||||||||| Sbjct 596556 TTGTCCTGCGCCAGGTCGATCTCCTCCGCTGTCCAGAATGAAGCCTCATGCTTCTTGTAC 596615 Query 158087 A 158087 | Sbjct 596616 A 596616 >seq1075 Length=250942 Score = 113 bits (124), Expect = 1e-19 Identities = 374/571 (65%), Gaps = 13/571 (2%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||||||||| ||||| || || ||||| |||||||| ||||| |||||| Sbjct 199485 TTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATCATCTCCATCCAATCGAAGGGGTTG 199426 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 | ||||| | | |||| ||| ||||| ||| | | || || || |||| | Sbjct 199425 GAAGAGTTGAAGATCTTGCCGTGTCCCAGGGCCGTCAACAGGCGATCTGCGACGAACTCG 199366 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCGCCGACGAA 157453 ||||||| ||||| | || | || ||||| || || || || ||| | Sbjct 199365 ATGTACTGGGTCATCAAGTCCTTATTCATTCCGATCAGATCGCAGGAGAGAGCCCCGCAG 199306 Query 157454 ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCATGAACTCTCTCCCGCGGC 157513 ||||| || | ||| || || ||| || || || ||||| || || Sbjct 199305 ATGAACTCCCGCTCCACCTCGACTGCGCCACGGATCATCTCGTGAACGACGTCTTCTGGG 199246 Query 157514 AGCCTATTCTTGAG-ATGCTTGTAGATGA-GAACG-GAAGCCGTGGCGTGAAGTCCTTCG 157570 ||| ||| || || |||| ||||| | | ||| ||| | ||||| || || || Sbjct 199245 AGCTTATGCTCCAGCATGC-CGTAGAGCAGGCACGCAAAGTC--CGCGTGGAGGCCCTCA 199189 Query 157571 TCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTTCTGCCGCTTCTTCAGC 157630 || | || |||||| ||| | ||| | || ||| | | |||||||||||| Sbjct 199188 TCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCGCGCTTCTTCAGC 199129 Query 157631 CAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACT 157690 ||| ||| ||||||||| | || ||||| | | |||||||| | || || | || Sbjct 199128 CAGAAGAGGGCGCAGAAGCAGCCGCTGAAGAGGATGCCCTCCACAGCGGCAAAAGCCACC 199069 Query 157691 AGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTT 157749 | | ||| |||||||| | | || | |||||||||| | | ||||| || ||||| Sbjct 199068 AAGCGCTC----AGTGAAGCTGCTCTCACGATTCATCCACTGCACGGCCCACAGAGCCTT 199013 Query 157750 CTTTTCGATGATTGGCATCGTCTGGATAGA-TCGCATGACGTGTCTCTGCTCTTCCGTGT 157808 || | | ||||| || ||||| || ||| | | | | || |||| | | || Sbjct 199012 CTGCTGCACAGCCGGCATGGTGTGGATGGAGTCG-AAAAGGCGATCCTTCTCTACAGGGT 198954 Query 157809 CCCTGAAGTAAGTCTGAATAAGCAGAGAGTA 157839 || ||| ||| |||||| | ||||||||| Sbjct 198953 CCTTGATGTACTGCTGAATCAACAGAGAGTA 198923 >seq1090 Length=248447 Score = 104 bits (114), Expect = 5e-17 Identities = 385/590 (65%), Gaps = 15/590 (3%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| |||| | ||||| || ||||||||||| ||||| || || ||||| ||||| Sbjct 62760 GTACTCTCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATCATCTCCAT 62701 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| || || ||||||| ||||| | | |||| || ||||| ||| | | Sbjct 62700 CCAGTCAAAAGGGTTGGACGAGTTGAAGATCTTGCTGTGTCCCAGTGCCGTCAACAGGCG 62641 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 || ||||| |||| |||||||| ||||| | || | | || ||||| | || Sbjct 62640 ATCTGCCACGAACTCGATGTACTGGGTCATCAAGTCCTTGTTCATGCCGATCAAATCGCA 62581 Query 157438 GGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCATG 157497 || || ||| | ||||| || | ||| || || ||| || || || || Sbjct 62580 GGACAGGGCCCCGCAGATGAACTCCCGCTCCACCTCCACTGCGCCGCGGATCATCTCGTG 62521 Query 157498 AACTCTCTCCCGCGGCAGCCTATTCTTGAG-ATGCTTGTAGA-TGAGAACG-GAAGCCGT 157554 ||| || || ||| | | || || |||| ||||| || | | ||| | Sbjct 62520 AACGACGTCTTCTGGAAGCTTGTGCTCCAGCATGC-CGTAGAGCAAGCATGCAAAGTC-- 62464 Query 157555 GGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 ||||| || || ||||| | || |||||| ||| | ||| | || ||| | | Sbjct 62463 CGCGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAG 62404 Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCA- 157673 ||||||||||||||| ||| ||||||||| || || || || | | |||||||| Sbjct 62403 GCCGCGCTTCTTCAGCCAGAAGAGGGCGCAGAAGGAGCCGCTAAAGAGGATGCCCTCCAC 62344 Query 157674 GACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCCACTTC 157732 | ||| ||||| || | | ||| ||||||| | | || |||||||||||| | Sbjct 62343 GGCAGCAAAAGCC-ACCAAGCGCTC----GGTGAAGCTGCTCTCACGGTTCATCCACTGC 62289 Query 157733 TCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGATAG-ATCGCATGACGTG 157791 | |||| || ||||||| | | ||||| || ||||| | |||| | || Sbjct 62288 ACAACCCACAGAGCCTTCTGCTGAACTGCCGGCATGGTGTGGATGGCATCGAAAAGGCTG 62229 Query 157792 TCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAGAGAGTACG 157841 ||| | ||| | | |||| ||| ||| || ||| || || ||||||| Sbjct 62228 TCT-TTCTCCGCAGGGTCCTTGATGTACTGCTCAATCAGGAGCGAGTACG 62180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073633116061184